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The map label for this gene is cydA [C]

Identifier: 148828236

GI number: 148828236

Start: 1669631

End: 1671196

Strand: Reverse

Name: cydA [C]

Synonym: CGSHiGG_09010

Alternate gene names: 148828236

Gene position: 1671196-1669631 (Counterclockwise)

Preceding gene: 148828237

Following gene: 148828235

Centisome position: 88.55

GC content: 36.72

Gene sequence:

>1566_bases
ATGTTAGACGTTGTTGATCTTTCTCGCTTGCAGTTTGCTTTAACTGCGTTGTATCACTTCATTTTCGTGCCGCTAACATT
GGGTTTATCCTTTATTCTTGTAATTATGGAAACTATTTATGTGGCGACAGGTAAAGAAGTTTATAAAGATATGACAAAAT
TTTGGGGAAAGTTATTTGGTATTAACTTTGCCCTTGGGGTGACCACCGGTATTATTATGGAATTCCAATTTGGTACTAAC
TGGTCTTATTATTCTCATTACGTAGGGGATATTTTTGGTGCGCCACTTGCTATTGAAGCGTTACTTGCCTTCTTCTTAGA
ATCCACTTTTGTGGGGTTATTTTTCTTCGGTTGGGATCGTTTATCAAAAGGAAAACACTTATTAGCAACTTATTGTGTGG
CTTTCGGTTCTAATTTATCTGCTATGTGGATTTTGGTTGCAAATGGCTGGATGCAAGCACCAACAGGTTCAGAATTTAAT
TTTGAAACTGTACGTATGGAAATGACTAACTTCTTAGATCTTTGGTTAAACCCTGTTGCACAAAGTAAATTCTTACATAC
TCTTTCTGCAGGTTATGTGACAGGCGCATTTTTTGTTTTAGCCATTAGCTCATACTTTTTACTAAAAGGTCGTGATTTTG
AATTTGCAAAACGTTCTTTCTCCGTAGCTGCTACTTTTGGATTTATCGCCTCTATTTCAGTGCTAATTCTTGGTGATGAA
TCTGGTTATGATATTGGTAAAGCACAACCAGTAAAATTAGCCGCAATGGAAGCTGAATTTGAAACTCACCCAGCACCTGC
TCCATTCCTTCCAGTAGCAATTCCAAATACGGCTGAAATGAAAAATGATTTTGCGATTGAAATTCCTTATCTTGGCGGTG
TAATAGCAACTCGTTCAATTGATAAAGAAATTATAGGTCTAAAAGATCTTCAAGCATTAAATGAAACTCGTGTACGTAGT
GGTATCCGTGCTTATGAATTATTTACTCAACTACGAGCTGAGAAAAAAGCAAATGGTCAAGTAAATGAAGAAACCAAAGC
ACAATTTAATGAAGTTAAAAAAGATCTTGGTTTCGGTTTATTATTAAAACGCTATACAAACAATGTTGTTGATGCGACAG
AAGAACAAATTAAACAAGCCGCTCGTGATACTATTCCAAATGTAGGCCCTAATTTTTGGGCATTTCGTGCAATGATTGCC
GCTGGTGGTTTAATTGCTTTACTTACATTCGGCGCATTTGTTCAAAATTTACGTAATAAAGTCACTCAAATTCCATTATT
GTTAAAAGTTCTTTTATGGGGATTGCCATTACCTTGGATTGCCATTGAGTGCGGTTGGTTCTTAGCAGAATATGGTCGTC
AGCCTTGGGCTATTTACGAGATCTTACCTGTTGGCGTATCCGCTTCTAATTTAAGTACAGGCGATTTATGGTTCTCCATT
GGTTTAATTTGTGCGCTTTATCTTGCGTTCATTATTGTTGAGATGTATTTGATGTTTAAATATGCGCGTTTGGGTCCAAG
TGCGTTAAAAACCGGCAAATACTACTTTGAACAATCAGCTAAATAG

Upstream 100 bases:

>100_bases
TTAAACTTAGCTGATTGGAGTTGAGTAATTAGGGATTATTTAAGGCATCGCCTTGTTAATCATTGTTGGAACTAATGTTG
TTTATACAAAGGAGTTGAGA

Downstream 100 bases:

>100_bases
GTAGGAGATAAATTATGATTGATTATGAATTTCTACGTTTTATTTGGTGGGTGTTAGTTATTGTATTATTGATTGGCTTC
TCTGTAACTGATGGATTTGA

Product: ATP-dependent RNA helicase HrpA

Products: NA

Alternate protein names: Cytochrome oxidase subunit I [H]

Number of amino acids: Translated: 521; Mature: 521

Protein sequence:

>521_residues
MLDVVDLSRLQFALTALYHFIFVPLTLGLSFILVIMETIYVATGKEVYKDMTKFWGKLFGINFALGVTTGIIMEFQFGTN
WSYYSHYVGDIFGAPLAIEALLAFFLESTFVGLFFFGWDRLSKGKHLLATYCVAFGSNLSAMWILVANGWMQAPTGSEFN
FETVRMEMTNFLDLWLNPVAQSKFLHTLSAGYVTGAFFVLAISSYFLLKGRDFEFAKRSFSVAATFGFIASISVLILGDE
SGYDIGKAQPVKLAAMEAEFETHPAPAPFLPVAIPNTAEMKNDFAIEIPYLGGVIATRSIDKEIIGLKDLQALNETRVRS
GIRAYELFTQLRAEKKANGQVNEETKAQFNEVKKDLGFGLLLKRYTNNVVDATEEQIKQAARDTIPNVGPNFWAFRAMIA
AGGLIALLTFGAFVQNLRNKVTQIPLLLKVLLWGLPLPWIAIECGWFLAEYGRQPWAIYEILPVGVSASNLSTGDLWFSI
GLICALYLAFIIVEMYLMFKYARLGPSALKTGKYYFEQSAK

Sequences:

>Translated_521_residues
MLDVVDLSRLQFALTALYHFIFVPLTLGLSFILVIMETIYVATGKEVYKDMTKFWGKLFGINFALGVTTGIIMEFQFGTN
WSYYSHYVGDIFGAPLAIEALLAFFLESTFVGLFFFGWDRLSKGKHLLATYCVAFGSNLSAMWILVANGWMQAPTGSEFN
FETVRMEMTNFLDLWLNPVAQSKFLHTLSAGYVTGAFFVLAISSYFLLKGRDFEFAKRSFSVAATFGFIASISVLILGDE
SGYDIGKAQPVKLAAMEAEFETHPAPAPFLPVAIPNTAEMKNDFAIEIPYLGGVIATRSIDKEIIGLKDLQALNETRVRS
GIRAYELFTQLRAEKKANGQVNEETKAQFNEVKKDLGFGLLLKRYTNNVVDATEEQIKQAARDTIPNVGPNFWAFRAMIA
AGGLIALLTFGAFVQNLRNKVTQIPLLLKVLLWGLPLPWIAIECGWFLAEYGRQPWAIYEILPVGVSASNLSTGDLWFSI
GLICALYLAFIIVEMYLMFKYARLGPSALKTGKYYFEQSAK
>Mature_521_residues
MLDVVDLSRLQFALTALYHFIFVPLTLGLSFILVIMETIYVATGKEVYKDMTKFWGKLFGINFALGVTTGIIMEFQFGTN
WSYYSHYVGDIFGAPLAIEALLAFFLESTFVGLFFFGWDRLSKGKHLLATYCVAFGSNLSAMWILVANGWMQAPTGSEFN
FETVRMEMTNFLDLWLNPVAQSKFLHTLSAGYVTGAFFVLAISSYFLLKGRDFEFAKRSFSVAATFGFIASISVLILGDE
SGYDIGKAQPVKLAAMEAEFETHPAPAPFLPVAIPNTAEMKNDFAIEIPYLGGVIATRSIDKEIIGLKDLQALNETRVRS
GIRAYELFTQLRAEKKANGQVNEETKAQFNEVKKDLGFGLLLKRYTNNVVDATEEQIKQAARDTIPNVGPNFWAFRAMIA
AGGLIALLTFGAFVQNLRNKVTQIPLLLKVLLWGLPLPWIAIECGWFLAEYGRQPWAIYEILPVGVSASNLSTGDLWFSI
GLICALYLAFIIVEMYLMFKYARLGPSALKTGKYYFEQSAK

Specific function: Probable cytochrome oxidase subunit [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=520, Percent_Identity=64.2307692307692, Blast_Score=715, Evalue=0.0,
Organism=Escherichia coli, GI1787212, Length=511, Percent_Identity=58.5127201565558, Blast_Score=605, Evalue=1e-174,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 58149; Mature: 58149

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDVVDLSRLQFALTALYHFIFVPLTLGLSFILVIMETIYVATGKEVYKDMTKFWGKLFG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
INFALGVTTGIIMEFQFGTNWSYYSHYVGDIFGAPLAIEALLAFFLESTFVGLFFFGWDR
CHHHHHHHHEEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LSKGKHLLATYCVAFGSNLSAMWILVANGWMQAPTGSEFNFETVRMEMTNFLDLWLNPVA
HCCCHHHHHHHHHHHCCCCCEEEEEEECCCEECCCCCCCCHHHHHHHHHHHHHHHHCHHH
QSKFLHTLSAGYVTGAFFVLAISSYFLLKGRDFEFAKRSFSVAATFGFIASISVLILGDE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEECC
SGYDIGKAQPVKLAAMEAEFETHPAPAPFLPVAIPNTAEMKNDFAIEIPYLGGVIATRSI
CCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEECCCCHHCCCCCEEEECCCCCCHHHHHH
DKEIIGLKDLQALNETRVRSGIRAYELFTQLRAEKKANGQVNEETKAQFNEVKKDLGFGL
HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
LLKRYTNNVVDATEEQIKQAARDTIPNVGPNFWAFRAMIAAGGLIALLTFGAFVQNLRNK
HHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
VTQIPLLLKVLLWGLPLPWIAIECGWFLAEYGRQPWAIYEILPVGVSASNLSTGDLWFSI
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHH
GLICALYLAFIIVEMYLMFKYARLGPSALKTGKYYFEQSAK
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHCCCC
>Mature Secondary Structure
MLDVVDLSRLQFALTALYHFIFVPLTLGLSFILVIMETIYVATGKEVYKDMTKFWGKLFG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
INFALGVTTGIIMEFQFGTNWSYYSHYVGDIFGAPLAIEALLAFFLESTFVGLFFFGWDR
CHHHHHHHHEEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LSKGKHLLATYCVAFGSNLSAMWILVANGWMQAPTGSEFNFETVRMEMTNFLDLWLNPVA
HCCCHHHHHHHHHHHCCCCCEEEEEEECCCEECCCCCCCCHHHHHHHHHHHHHHHHCHHH
QSKFLHTLSAGYVTGAFFVLAISSYFLLKGRDFEFAKRSFSVAATFGFIASISVLILGDE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEECC
SGYDIGKAQPVKLAAMEAEFETHPAPAPFLPVAIPNTAEMKNDFAIEIPYLGGVIATRSI
CCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEECCCCHHCCCCCEEEECCCCCCHHHHHH
DKEIIGLKDLQALNETRVRSGIRAYELFTQLRAEKKANGQVNEETKAQFNEVKKDLGFGL
HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
LLKRYTNNVVDATEEQIKQAARDTIPNVGPNFWAFRAMIAAGGLIALLTFGAFVQNLRNK
HHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
VTQIPLLLKVLLWGLPLPWIAIECGWFLAEYGRQPWAIYEILPVGVSASNLSTGDLWFSI
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHH
GLICALYLAFIIVEMYLMFKYARLGPSALKTGKYYFEQSAK
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]