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The map label for this gene is cydB [C]

Identifier: 148828235

GI number: 148828235

Start: 1668480

End: 1669616

Strand: Reverse

Name: cydB [C]

Synonym: CGSHiGG_09005

Alternate gene names: 148828235

Gene position: 1669616-1668480 (Counterclockwise)

Preceding gene: 148828236

Following gene: 148828234

Centisome position: 88.47

GC content: 36.32

Gene sequence:

>1137_bases
ATGATTGATTATGAATTTCTACGTTTTATTTGGTGGGTGTTAGTTATTGTATTATTGATTGGCTTCTCTGTAACTGATGG
ATTTGATATGGGCGTGACCGCACTTTTACCTGTAATAGGTAAAAAAGAAGTGGAACGCCGTATTATGATCAACACTATTG
CTCCCCATTGGGATGGTAACCAAGTTTGGTTATTAACTGCAGGTGGTGCAATATTTGCAGCTTGGCCAATTGTATATGCA
GTATCTTTCTCAGGTTTTTACATTGCATTAGTATTAGTCTTGGCAGCGTTATTCTTACGTCCATTGGGTTTTGAATATCG
TGCAAAAATTGATAATCCAACTTGGCGTTCTGTTTGGGACTGGGGATTATTCGCAGGTGGTTTTGTACCAGCATTAGTAT
TTGGCGTGGCTTTTGGTAATTTATTACAAGGCGTTCCATTCCATTTTAACGAATTAACTCAAGTGACTTATACAGGTTCA
TTTTTTGAGCTATTAAATCCATTCGCATTATTATGTGGTGTTATTAGCTTATCAATGCTTGTCACTCACGGCGCAAACTG
GTTACAAATGAAAACCACTGAAGCCTTACGTGATCGTGCTCGTTCAGTAAGTCAAATTGGTTCTATTGTGACTTTAATTA
CATTCGTATTAGCTGGCGTATGGTTATATTCTAAAGATGGTTATGTAGTTACTAGCACTATCGATCATTTCGCTCCATCG
TCTCCAATGAATAAAGAAGTTGCTGTAGAAACTGGCGCGTGGTTTAGAAATTTCAATGAAATGCCAATTCTTTGGATTTT
CCCTGCGTTAGCTGTAGTTGCTGCATTATTAAATGCTGCATTTTCTAAAGCGAATCGTTGTGGTTTTGCATTTTTCTTCT
CTGCATTAACAATGGCTGGTGTGATTATTACTGCAGCAGTATCAATGTTCCCATTTGTGATGCCTTCAAGTTCACATCCT
GAACAAAGTTTATTAATGTGGGATTCGACTTCAAGTGAATTAACATTAACATTAATGCTGATTTTTGCAGTTGTTTTTGT
GGTCATTGCTTTAGCTTATACTATTTGGTCTTACTCAAAAATGTTTGGTCGTTTAGATGCTAATTTCATTGATAAAAATA
AACACTCATTATACTAA

Upstream 100 bases:

>100_bases
AGATGTATTTGATGTTTAAATATGCGCGTTTGGGTCCAAGTGCGTTAAAAACCGGCAAATACTACTTTGAACAATCAGCT
AAATAGGTAGGAGATAAATT

Downstream 100 bases:

>100_bases
GGAGAAATAGAATGTTATATGCGATTTGGGTAGTGGGTGTATTGTTTGCAATTTGGGCTAGTGCGAAATGCACCATCAAT
AAAGAAAAAAAAGGTAAATT

Product: putative cytochrome oxidase subunit II

Products: NA

Alternate protein names: Cytochrome oxidase subunit II [H]

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MIDYEFLRFIWWVLVIVLLIGFSVTDGFDMGVTALLPVIGKKEVERRIMINTIAPHWDGNQVWLLTAGGAIFAAWPIVYA
VSFSGFYIALVLVLAALFLRPLGFEYRAKIDNPTWRSVWDWGLFAGGFVPALVFGVAFGNLLQGVPFHFNELTQVTYTGS
FFELLNPFALLCGVISLSMLVTHGANWLQMKTTEALRDRARSVSQIGSIVTLITFVLAGVWLYSKDGYVVTSTIDHFAPS
SPMNKEVAVETGAWFRNFNEMPILWIFPALAVVAALLNAAFSKANRCGFAFFFSALTMAGVIITAAVSMFPFVMPSSSHP
EQSLLMWDSTSSELTLTLMLIFAVVFVVIALAYTIWSYSKMFGRLDANFIDKNKHSLY

Sequences:

>Translated_378_residues
MIDYEFLRFIWWVLVIVLLIGFSVTDGFDMGVTALLPVIGKKEVERRIMINTIAPHWDGNQVWLLTAGGAIFAAWPIVYA
VSFSGFYIALVLVLAALFLRPLGFEYRAKIDNPTWRSVWDWGLFAGGFVPALVFGVAFGNLLQGVPFHFNELTQVTYTGS
FFELLNPFALLCGVISLSMLVTHGANWLQMKTTEALRDRARSVSQIGSIVTLITFVLAGVWLYSKDGYVVTSTIDHFAPS
SPMNKEVAVETGAWFRNFNEMPILWIFPALAVVAALLNAAFSKANRCGFAFFFSALTMAGVIITAAVSMFPFVMPSSSHP
EQSLLMWDSTSSELTLTLMLIFAVVFVVIALAYTIWSYSKMFGRLDANFIDKNKHSLY
>Mature_378_residues
MIDYEFLRFIWWVLVIVLLIGFSVTDGFDMGVTALLPVIGKKEVERRIMINTIAPHWDGNQVWLLTAGGAIFAAWPIVYA
VSFSGFYIALVLVLAALFLRPLGFEYRAKIDNPTWRSVWDWGLFAGGFVPALVFGVAFGNLLQGVPFHFNELTQVTYTGS
FFELLNPFALLCGVISLSMLVTHGANWLQMKTTEALRDRARSVSQIGSIVTLITFVLAGVWLYSKDGYVVTSTIDHFAPS
SPMNKEVAVETGAWFRNFNEMPILWIFPALAVVAALLNAAFSKANRCGFAFFFSALTMAGVIITAAVSMFPFVMPSSSHP
EQSLLMWDSTSSELTLTLMLIFAVVFVVIALAYTIWSYSKMFGRLDANFIDKNKHSLY

Specific function: Probable cytochrome oxidase subunit [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB and CydB. Probable ortholog of the ancestor of AppB/CydB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=379, Percent_Identity=61.2137203166227, Blast_Score=488, Evalue=1e-139,
Organism=Escherichia coli, GI1787213, Length=379, Percent_Identity=50.6596306068602, Blast_Score=401, Evalue=1e-113,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 42084; Mature: 42084

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDYEFLRFIWWVLVIVLLIGFSVTDGFDMGVTALLPVIGKKEVERRIMINTIAPHWDGN
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHCCCCCCCCC
QVWLLTAGGAIFAAWPIVYAVSFSGFYIALVLVLAALFLRPLGFEYRAKIDNPTWRSVWD
EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEECCCCCCHHHHHH
WGLFAGGFVPALVFGVAFGNLLQGVPFHFNELTQVTYTGSFFELLNPFALLCGVISLSML
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHH
VTHGANWLQMKTTEALRDRARSVSQIGSIVTLITFVLAGVWLYSKDGYVVTSTIDHFAPS
HHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEECHHHCCCC
SPMNKEVAVETGAWFRNFNEMPILWIFPALAVVAALLNAAFSKANRCGFAFFFSALTMAG
CCCCCCEEEECCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
VIITAAVSMFPFVMPSSSHPEQSLLMWDSTSSELTLTLMLIFAVVFVVIALAYTIWSYSK
HHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MFGRLDANFIDKNKHSLY
HHHCCCCHHHCCCCCCCC
>Mature Secondary Structure
MIDYEFLRFIWWVLVIVLLIGFSVTDGFDMGVTALLPVIGKKEVERRIMINTIAPHWDGN
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHCCCCCCCCC
QVWLLTAGGAIFAAWPIVYAVSFSGFYIALVLVLAALFLRPLGFEYRAKIDNPTWRSVWD
EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEECCCCCCHHHHHH
WGLFAGGFVPALVFGVAFGNLLQGVPFHFNELTQVTYTGSFFELLNPFALLCGVISLSML
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHH
VTHGANWLQMKTTEALRDRARSVSQIGSIVTLITFVLAGVWLYSKDGYVVTSTIDHFAPS
HHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEECHHHCCCC
SPMNKEVAVETGAWFRNFNEMPILWIFPALAVVAALLNAAFSKANRCGFAFFFSALTMAG
CCCCCCEEEECCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
VIITAAVSMFPFVMPSSSHPEQSLLMWDSTSSELTLTLMLIFAVVFVVIALAYTIWSYSK
HHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MFGRLDANFIDKNKHSLY
HHHCCCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]