Click here to switch to the map view.

The map label for this gene is atpH

Identifier: 148827678

GI number: 148827678

Start: 1030356

End: 1030889

Strand: Reverse

Name: atpH

Synonym: CGSHiGG_05665

Alternate gene names: 148827678

Gene position: 1030889-1030356 (Counterclockwise)

Preceding gene: 148827679

Following gene: 148827677

Centisome position: 54.63

GC content: 39.51

Gene sequence:

>534_bases
ATGTCAGAATTAACTACAATAGCTCGCCCTTATGCAAAAGCTGCATTCGACTTTGCCATTGAACAAAGTGCGGTCGAAAA
ATGGACTGAAATGTTAGGTTTTGCTGCTGCCGTAGCTGAAGATGAAACGGTAAAAGCTTACTTAAGTAGTTCTCTTTCTG
CACAGAAATTAGCTGATACAGTAATTTCTATTTGTGGCGAACAATTGGATCAATATGGGCAAAATCTTATTCGGTTAATG
GCTGAAAATAAGCGTTTGAGTGCTATTCCTGCGGTGTTTGAAGAATTTAAACATCACGTAGAGGAACACCAAGCTATTGC
AGAAGTTGAAGTAACATCTGCGCAACCATTGAATGCAACACAAATCGAAAAAATTGCAGCTGCAATGGAAAAAAGATTAG
CTCGCAAAGTGAAATTAAATTGCAACGTGGATAACGCACTTATTGCAGGTGTGATTGTTCGTACTGAAGACTTTGTGATT
GACGGAAGTAGCCGTGGGCAACTTACTCGTCTCGCAAACGAGTTGCAATTATAA

Upstream 100 bases:

>100_bases
TGTGGCTGGTGCTGAGAAAATTGTGGGTCGTTCTATTGATGAAGCGGCAAACAATGACATTATTGATAAATTAGTTGCAG
AGTTATAAGAGGCTTAGCTT

Downstream 100 bases:

>100_bases
GAGGAATACAAGATGCAACTAAATTCAACTGAAATTAGTGAATTGATTAAAAAACGCATCGCTCAATTTGACGTGGTGAG
CGAAGCCCGTAATACAGGGA

Product: F0F1 ATP synthase subunit delta

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F(1) sector subunit delta; F-type ATPase subunit delta; F-ATPase subunit delta

Number of amino acids: Translated: 177; Mature: 176

Protein sequence:

>177_residues
MSELTTIARPYAKAAFDFAIEQSAVEKWTEMLGFAAAVAEDETVKAYLSSSLSAQKLADTVISICGEQLDQYGQNLIRLM
AENKRLSAIPAVFEEFKHHVEEHQAIAEVEVTSAQPLNATQIEKIAAAMEKRLARKVKLNCNVDNALIAGVIVRTEDFVI
DGSSRGQLTRLANELQL

Sequences:

>Translated_177_residues
MSELTTIARPYAKAAFDFAIEQSAVEKWTEMLGFAAAVAEDETVKAYLSSSLSAQKLADTVISICGEQLDQYGQNLIRLM
AENKRLSAIPAVFEEFKHHVEEHQAIAEVEVTSAQPLNATQIEKIAAAMEKRLARKVKLNCNVDNALIAGVIVRTEDFVI
DGSSRGQLTRLANELQL
>Mature_176_residues
SELTTIARPYAKAAFDFAIEQSAVEKWTEMLGFAAAVAEDETVKAYLSSSLSAQKLADTVISICGEQLDQYGQNLIRLMA
ENKRLSAIPAVFEEFKHHVEEHQAIAEVEVTSAQPLNATQIEKIAAAMEKRLARKVKLNCNVDNALIAGVIVRTEDFVID
GSSRGQLTRLANELQL

Specific function: This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction

COG id: COG0712

COG function: function code C; F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein)

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase delta chain family

Homologues:

Organism=Escherichia coli, GI1790173, Length=176, Percent_Identity=57.9545454545455, Blast_Score=213, Evalue=6e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPD_HAEI8 (Q4QN61)

Other databases:

- EMBL:   CP000057
- RefSeq:   YP_248196.1
- ProteinModelPortal:   Q4QN61
- SMR:   Q4QN61
- STRING:   Q4QN61
- GeneID:   3429923
- GenomeReviews:   CP000057_GR
- KEGG:   hit:NTHI0612
- eggNOG:   COG0712
- HOGENOM:   HBG668108
- OMA:   FIAICGE
- PhylomeDB:   Q4QN61
- ProtClustDB:   PRK05758
- BioCyc:   HINF281310:NTHI0612-MONOMER
- HAMAP:   MF_01416
- InterPro:   IPR000711
- InterPro:   IPR020781
- Gene3D:   G3DSA:1.10.520.20
- PANTHER:   PTHR11910
- PRINTS:   PR00125
- TIGRFAMs:   TIGR01145

Pfam domain/function: PF00213 OSCP; SSF47928 ATPsynt_OSCP

EC number: 3.6.3.14

Molecular weight: Translated: 19451; Mature: 19320

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: PS00389 ATPASE_DELTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSELTTIARPYAKAAFDFAIEQSAVEKWTEMLGFAAAVAEDETVKAYLSSSLSAQKLADT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHH
VISICGEQLDQYGQNLIRLMAENKRLSAIPAVFEEFKHHVEEHQAIAEVEVTSAQPLNAT
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHH
QIEKIAAAMEKRLARKVKLNCNVDNALIAGVIVRTEDFVIDGSSRGQLTRLANELQL
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHEECCCEEEECCCCCHHHHHHHHHCC
>Mature Secondary Structure 
SELTTIARPYAKAAFDFAIEQSAVEKWTEMLGFAAAVAEDETVKAYLSSSLSAQKLADT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHH
VISICGEQLDQYGQNLIRLMAENKRLSAIPAVFEEFKHHVEEHQAIAEVEVTSAQPLNAT
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHH
QIEKIAAAMEKRLARKVKLNCNVDNALIAGVIVRTEDFVIDGSSRGQLTRLANELQL
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHEECCCEEEECCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA