Click here to switch to the map view.

The map label for this gene is comB

Identifier: 148827635

GI number: 148827635

Start: 982930

End: 983436

Strand: Reverse

Name: comB

Synonym: CGSHiGG_05410

Alternate gene names: 148827635

Gene position: 983436-982930 (Counterclockwise)

Preceding gene: 148827636

Following gene: 148827634

Centisome position: 52.11

GC content: 33.93

Gene sequence:

>507_bases
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAGGCACAGCAAA
AGTCGTTTGAACAACTTAATCAACAGCTTCATAAAACTACCATGCAAATTGATCAGTTACGCATTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCCAATAACTTAAGCTTGGAAGGTAACGCGCAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA

Upstream 100 bases:

>100_bases
ACCCGAAAACTGGCAGCGAGTAGAAACAGAACTCCCTTTTATTGCGCTGGGCAACGCGCTATGGCAAAAAGATTTACATC
AACAAAAAGTGGGTGGTTAA

Downstream 100 bases:

>100_bases
AAGCTTTTTTTAACGATCCTTTTACTCCTTTTGGAAAATGGCTAAGTCAGCCTTTTTATGTGCACGGTTTAACCTTTTTA
TTGCTATTAAGTGCGGTGAT

Product: competence protein B

Products: NA

Alternate protein names: DNA transformation protein ComB

Number of amino acids: Translated: 168; Mature: 167

Protein sequence:

>168_residues
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQKSFEQLNQQLHKTTMQIDQLRIAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK

Sequences:

>Translated_168_residues
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQKSFEQLNQQLHKTTMQIDQLRIAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK
>Mature_167_residues
SMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQKSFEQLNQQLHKTTMQIDQLRIAVKVGE
VLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHFD
VEQGAEK

Specific function: Involved in transformation (competence for DNA uptake)

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): COMB_HAEIN (P31769)

Other databases:

- EMBL:   M62809
- EMBL:   L42023
- PIR:   B64068
- RefSeq:   NP_438599.1
- GeneID:   949525
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0438
- NMPDR:   fig|71421.1.peg.412
- TIGR:   HI_0438
- HOGENOM:   HBG495044
- OMA:   ILQGETE
- ProtClustDB:   CLSK870407
- BioCyc:   HINF71421:HI_0438-MONOMER
- InterPro:   IPR016778
- InterPro:   IPR007813
- PIRSF:   PIRSF020785

Pfam domain/function: PF05137 PilN

EC number: NA

Molecular weight: Translated: 19751; Mature: 19620

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQKSFEQLN
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QQLHKTTMQIDQLRIAVKVGEVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCC
EGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHFDVEQGAEK
CCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCEEEEEEECCCCCCC
>Mature Secondary Structure 
SMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQKSFEQLN
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QQLHKTTMQIDQLRIAVKVGEVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCC
EGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHFDVEQGAEK
CCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 7542800