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The map label for this gene is comF [H]

Identifier: 148827631

GI number: 148827631

Start: 979956

End: 980642

Strand: Reverse

Name: comF [H]

Synonym: CGSHiGG_05390

Alternate gene names: 148827631

Gene position: 980642-979956 (Counterclockwise)

Preceding gene: 148827632

Following gene: 148827630

Centisome position: 51.96

GC content: 38.72

Gene sequence:

>687_bases
ATGAATTTTTTTAATTTTCGCTGTATCCACTGTCGTGGCAATCTTCATATTGCAAAAAATGGGCTATGTTCAGGTTGCCA
AAAACAAATTAAATCTTTTCCTTATTGCGGTCATTGTGGTGCGGAATTGCAATATTATGCACAGCATTGTGGGAATTGCC
TTAAACAAGAACCTAGTTGGGATAAGATGGTCATTATTGGGCATTATATTGAACCTCTTTCGATATTGATTCACCGTTTT
AAATTTCAAAATCAATTTTGGATTGACCGCACTTTAGCTCGGCTTTTATATCTTGCGGTGCGTGATGCTAAACGAACGCA
TCAACTTAAATTGCCAGAGGCAATCATTCCTGTGCCTTTATATCATTTTCGTCAGTGGCAACGGGGTTATAATCAGGCAG
ATTTATTATCTCGGCAATTAAGTCGTTGGCTGGATATTCCTAATTTGAACAATATCGTAAAGCGTGTGAAACACACCCAT
GCTCAACGTGGTTTGAGTGCAAAAGATCGTCGTCAGAATTTAAAAAATGCCTTTTCTCTTGCTGTTTCGAAAAATGAATT
TCCTTATTGTCGTGTTGCGTTGGTGGATGATGTGATTACTACTGGTTCTACACTCAATGAAATCTCAAAATTGTTGCGAA
AATTAGGTGTGGAGGAGATTCAAGTGTGGGGGCTGGCGCGAGCTTAA

Upstream 100 bases:

>100_bases
TGAGCTAGTGATTTTCGTCACGCCACATATTTTAAAAGCAGGAGAAACGTTAGAGGCGTTGAAACAAAAAAGTGCGGGTA
AAAAATAACTTTTTTAGACG

Downstream 100 bases:

>100_bases
TATAAAGCACTGGAAAAAAAAGCGCGATAAGCGTATTATTCCCGATACTTTCTCTCAAGTATTTAGGACATAATTATGGA
ACAAGCAACCCAGCAAATCG

Product: competence protein F

Products: NA

Alternate protein names: DNA transformation protein ComF; Protein COM101A [H]

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MNFFNFRCIHCRGNLHIAKNGLCSGCQKQIKSFPYCGHCGAELQYYAQHCGNCLKQEPSWDKMVIIGHYIEPLSILIHRF
KFQNQFWIDRTLARLLYLAVRDAKRTHQLKLPEAIIPVPLYHFRQWQRGYNQADLLSRQLSRWLDIPNLNNIVKRVKHTH
AQRGLSAKDRRQNLKNAFSLAVSKNEFPYCRVALVDDVITTGSTLNEISKLLRKLGVEEIQVWGLARA

Sequences:

>Translated_228_residues
MNFFNFRCIHCRGNLHIAKNGLCSGCQKQIKSFPYCGHCGAELQYYAQHCGNCLKQEPSWDKMVIIGHYIEPLSILIHRF
KFQNQFWIDRTLARLLYLAVRDAKRTHQLKLPEAIIPVPLYHFRQWQRGYNQADLLSRQLSRWLDIPNLNNIVKRVKHTH
AQRGLSAKDRRQNLKNAFSLAVSKNEFPYCRVALVDDVITTGSTLNEISKLLRKLGVEEIQVWGLARA
>Mature_228_residues
MNFFNFRCIHCRGNLHIAKNGLCSGCQKQIKSFPYCGHCGAELQYYAQHCGNCLKQEPSWDKMVIIGHYIEPLSILIHRF
KFQNQFWIDRTLARLLYLAVRDAKRTHQLKLPEAIIPVPLYHFRQWQRGYNQADLLSRQLSRWLDIPNLNNIVKRVKHTH
AQRGLSAKDRRQNLKNAFSLAVSKNEFPYCRVALVDDVITTGSTLNEISKLLRKLGVEEIQVWGLARA

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

Organism=Escherichia coli, GI87082263, Length=222, Percent_Identity=41.4414414414414, Blast_Score=157, Evalue=7e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 26544; Mature: 26544

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
3.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFFNFRCIHCRGNLHIAKNGLCSGCQKQIKSFPYCGHCGAELQYYAQHCGNCLKQEPSW
CCCCCEEEEEEECCEEEECCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
DKMVIIGHYIEPLSILIHRFKFQNQFWIDRTLARLLYLAVRDAKRTHQLKLPEAIIPVPL
CCEEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCH
YHFRQWQRGYNQADLLSRQLSRWLDIPNLNNIVKRVKHTHAQRGLSAKDRRQNLKNAFSL
HHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
AVSKNEFPYCRVALVDDVITTGSTLNEISKLLRKLGVEEIQVWGLARA
HHCCCCCCEEHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHCCCCC
>Mature Secondary Structure
MNFFNFRCIHCRGNLHIAKNGLCSGCQKQIKSFPYCGHCGAELQYYAQHCGNCLKQEPSW
CCCCCEEEEEEECCEEEECCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
DKMVIIGHYIEPLSILIHRFKFQNQFWIDRTLARLLYLAVRDAKRTHQLKLPEAIIPVPL
CCEEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCH
YHFRQWQRGYNQADLLSRQLSRWLDIPNLNNIVKRVKHTHAQRGLSAKDRRQNLKNAFSL
HHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
AVSKNEFPYCRVALVDDVITTGSTLNEISKLLRKLGVEEIQVWGLARA
HHCCCCCCEEHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 1856167; 7542800 [H]