Click here to switch to the map view.

The map label for this gene is nudC [H]

Identifier: 148827629

GI number: 148827629

Start: 978423

End: 979217

Strand: Reverse

Name: nudC [H]

Synonym: CGSHiGG_05380

Alternate gene names: 148827629

Gene position: 979217-978423 (Counterclockwise)

Preceding gene: 148827630

Following gene: 148827628

Centisome position: 51.89

GC content: 38.87

Gene sequence:

>795_bases
ATGAAAATACTTCAACAAGATGATTTTGGTTATTGGTTGCTTACACAAGGTTCTAATCTGTATTTAGTGAATAATGAATT
GCCTTTTGGTATCGCTAAAGATATTGATTTGGAAGGATTGCAGGCAATGCAAATTGGAGAATGGAAAAATCATCCGTTGT
GGCTTGTGGCTGAGCAAGAAAGTGATGAACGAGAATATGTGAGTTTGAGTCACTTGCTTTCACTGCCAGAGGATGAATTC
CATATATTAAGCCGAGGTGTGGAAATTAATCATTTTCTGAAAACCCATAAATTCTGTGGAAAGTGCGGTCATAAAACACA
ACAAACTCAAGATGAACTTGCTGTGCAATGTACTCACTGTGGGTATCAAACTTATCCTGTGATTTGCCCATCAATTATTG
TTGCAGTTCGTCGTGGTCACGAAATTCTATTGGCAAATCATAAGCGACATTATAGTCCTAACGGAGGAATATACACGACG
CTTGCAGGTTTTGTCGAAGTAGGGGAAACATTTGAACAAGCAGTGCAGAGAGAGGTTTTTGAAGAAACAGGGATTTCAAT
AAAAAATCTTCGTTATTTCGGTAGCCAGCCTTGGGCATTTCCAAACTCTCAAATGGTCGGCTTTCTTGCTGATTATGAAA
GCGGAGAAATAACATTGCAGGAAAGTGAAATTTATGATGCACAATGGTTTTCTTATGATCAACCCTTGCCAGAATTACCG
CCAACGGGTACTATCGCTCGCAAATTAATTCATGCGACGCTTGAACTTTGTAAAGCGGAACATAAATGCGATTAA

Upstream 100 bases:

>100_bases
TGAGCATCAACGTGGCGAACATTCTTATTATTAGTGAGTTATAAAAGAAGATTTATAATGACCGCACTTTTGAAAGTGCG
GTTATTTTTATGGAGAAAAA

Downstream 100 bases:

>100_bases
TAAATATTCCAACTCTTACGAATTAAGGAAATAAGATGCGAAATCCGATTCATAAACGCTTAGAAAACTTAGAAAGTTGG
CAACATCTTACTTTTATGGC

Product: NADH pyrophosphatase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MKILQQDDFGYWLLTQGSNLYLVNNELPFGIAKDIDLEGLQAMQIGEWKNHPLWLVAEQESDEREYVSLSHLLSLPEDEF
HILSRGVEINHFLKTHKFCGKCGHKTQQTQDELAVQCTHCGYQTYPVICPSIIVAVRRGHEILLANHKRHYSPNGGIYTT
LAGFVEVGETFEQAVQREVFEETGISIKNLRYFGSQPWAFPNSQMVGFLADYESGEITLQESEIYDAQWFSYDQPLPELP
PTGTIARKLIHATLELCKAEHKCD

Sequences:

>Translated_264_residues
MKILQQDDFGYWLLTQGSNLYLVNNELPFGIAKDIDLEGLQAMQIGEWKNHPLWLVAEQESDEREYVSLSHLLSLPEDEF
HILSRGVEINHFLKTHKFCGKCGHKTQQTQDELAVQCTHCGYQTYPVICPSIIVAVRRGHEILLANHKRHYSPNGGIYTT
LAGFVEVGETFEQAVQREVFEETGISIKNLRYFGSQPWAFPNSQMVGFLADYESGEITLQESEIYDAQWFSYDQPLPELP
PTGTIARKLIHATLELCKAEHKCD
>Mature_264_residues
MKILQQDDFGYWLLTQGSNLYLVNNELPFGIAKDIDLEGLQAMQIGEWKNHPLWLVAEQESDEREYVSLSHLLSLPEDEF
HILSRGVEINHFLKTHKFCGKCGHKTQQTQDELAVQCTHCGYQTYPVICPSIIVAVRRGHEILLANHKRHYSPNGGIYTT
LAGFVEVGETFEQAVQREVFEETGISIKNLRYFGSQPWAFPNSQMVGFLADYESGEITLQESEIYDAQWFSYDQPLPELP
PTGTIARKLIHATLELCKAEHKCD

Specific function: Unknown

COG id: COG2816

COG function: function code L; NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain [H]

Homologues:

Organism=Homo sapiens, GI13899267, Length=202, Percent_Identity=34.6534653465347, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI50593112, Length=175, Percent_Identity=32.5714285714286, Blast_Score=92, Evalue=4e-19,
Organism=Escherichia coli, GI48994995, Length=261, Percent_Identity=47.1264367816092, Blast_Score=262, Evalue=2e-71,
Organism=Caenorhabditis elegans, GI212645999, Length=216, Percent_Identity=25, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI71986510, Length=216, Percent_Identity=25, Blast_Score=81, Evalue=5e-16,
Organism=Saccharomyces cerevisiae, GI6321371, Length=226, Percent_Identity=30.0884955752212, Blast_Score=90, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015375
- InterPro:   IPR022925
- InterPro:   IPR020084
- InterPro:   IPR000086
- InterPro:   IPR015797
- InterPro:   IPR015376 [H]

Pfam domain/function: PF00293 NUDIX; PF09296 NUDIX-like; PF09297 zf-NADH-PPase [H]

EC number: =3.6.1.22 [H]

Molecular weight: Translated: 30146; Mature: 30146

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS00893 NUDIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILQQDDFGYWLLTQGSNLYLVNNELPFGIAKDIDLEGLQAMQIGEWKNHPLWLVAEQE
CCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEECCC
SDEREYVSLSHLLSLPEDEFHILSRGVEINHFLKTHKFCGKCGHKTQQTQDELAVQCTHC
CCCHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHEEEECC
GYQTYPVICPSIIVAVRRGHEILLANHKRHYSPNGGIYTTLAGFVEVGETFEQAVQREVF
CCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
EETGISIKNLRYFGSQPWAFPNSQMVGFLADYESGEITLQESEIYDAQWFSYDQPLPELP
HHHCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHCCCCCCCCCCC
PTGTIARKLIHATLELCKAEHKCD
CCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKILQQDDFGYWLLTQGSNLYLVNNELPFGIAKDIDLEGLQAMQIGEWKNHPLWLVAEQE
CCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEECCC
SDEREYVSLSHLLSLPEDEFHILSRGVEINHFLKTHKFCGKCGHKTQQTQDELAVQCTHC
CCCHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHEEEECC
GYQTYPVICPSIIVAVRRGHEILLANHKRHYSPNGGIYTTLAGFVEVGETFEQAVQREVF
CCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
EETGISIKNLRYFGSQPWAFPNSQMVGFLADYESGEITLQESEIYDAQWFSYDQPLPELP
HHHCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHCCCCCCCCCCC
PTGTIARKLIHATLELCKAEHKCD
CCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA