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The map label for this gene is rbn [C]

Identifier: 148827430

GI number: 148827430

Start: 789505

End: 790314

Strand: Reverse

Name: rbn [C]

Synonym: CGSHiGG_04180

Alternate gene names: 148827430

Gene position: 790314-789505 (Counterclockwise)

Preceding gene: 148827431

Following gene: 148827428

Centisome position: 41.88

GC content: 34.2

Gene sequence:

>810_bases
ATGATTTCATTAAAAAATTTTGGATTATTATTTTGGAAACGTTTTTCAGAAAATAAACTTAATCAAGTAGCTGGCGCATT
GACTTATAGCACAATGTTAGCAATGGTTCCTTTAGTTATGGTTATTTTTTCTATTTTCTCTGCTTTTCCTGTATTCAATG
AAGTAACGGGAGAATTAAAAGAAATGATTTTTACTAATTTTGCGCCATCAGCGAGTGATATGGTGGGCGAATATATCGAT
CAATTTGTATCAAACTCAAAGAAAATGAGTGCGGTGGGAATTGTGAGTTTAATTGCCGTTGCCTTGATGCTAATTAATAA
CATCGACCGAACACTAAATAGTATTTGGCACAATAGTCAATCTCGCTCTCCGCTTTCTTCTTTTGCGATTTATTGGATGA
TTTTGACACTTGGCCCACTTATTATTGGCGTGAGCATTGGGATTAGTTCGTATATTAAAATAATGTTTGAGCAATCGGAA
CATTTATCATTAGGCTTAAAATTGCTCAGTTTTGTGCCTTTTTTATTTACTTGGTTTATTTTTACGCTTATTTATACGGT
TGTACCGAATAAAAAAGTGAAAATTAAGCATTCAGCTTACGGTGCATTTCTTGCCGCGATTTTTTTCACTCTTGGTAAAC
AAGCATTTACTTGGTATATCGTCACTTTTCCCTCTTATCAATTAATTTACGGTGCAATGGCAACTTTACCAATTATGTTA
TTGTGGATTCAAATAAGTTGGCTTGTGGTATTAGTTGGTGCGCAATTAGCTTCAACCTTGGATGAAATTGGCGAGCAGAT
CGAGCAATAA

Upstream 100 bases:

>100_bases
GTTGGTATTTTGTGGATCCGACCGTATCATTACCGACAATGAAACAACCTTGTGTCTGTGGTTCGGGTAAAAAATTTAAA
CATTGTTGTGGAGGATTTCT

Downstream 100 bases:

>100_bases
TGCTCGATCTATAAGAAAATTATCTGGCAATCGCCAATGTTTGATATAAATAATGGCGATAATCATTGAGTAGCTGAATA
TCAGAAGAATCTTCTAATTT

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MISLKNFGLLFWKRFSENKLNQVAGALTYSTMLAMVPLVMVIFSIFSAFPVFNEVTGELKEMIFTNFAPSASDMVGEYID
QFVSNSKKMSAVGIVSLIAVALMLINNIDRTLNSIWHNSQSRSPLSSFAIYWMILTLGPLIIGVSIGISSYIKIMFEQSE
HLSLGLKLLSFVPFLFTWFIFTLIYTVVPNKKVKIKHSAYGAFLAAIFFTLGKQAFTWYIVTFPSYQLIYGAMATLPIML
LWIQISWLVVLVGAQLASTLDEIGEQIEQ

Sequences:

>Translated_269_residues
MISLKNFGLLFWKRFSENKLNQVAGALTYSTMLAMVPLVMVIFSIFSAFPVFNEVTGELKEMIFTNFAPSASDMVGEYID
QFVSNSKKMSAVGIVSLIAVALMLINNIDRTLNSIWHNSQSRSPLSSFAIYWMILTLGPLIIGVSIGISSYIKIMFEQSE
HLSLGLKLLSFVPFLFTWFIFTLIYTVVPNKKVKIKHSAYGAFLAAIFFTLGKQAFTWYIVTFPSYQLIYGAMATLPIML
LWIQISWLVVLVGAQLASTLDEIGEQIEQ
>Mature_269_residues
MISLKNFGLLFWKRFSENKLNQVAGALTYSTMLAMVPLVMVIFSIFSAFPVFNEVTGELKEMIFTNFAPSASDMVGEYID
QFVSNSKKMSAVGIVSLIAVALMLINNIDRTLNSIWHNSQSRSPLSSFAIYWMILTLGPLIIGVSIGISSYIKIMFEQSE
HLSLGLKLLSFVPFLFTWFIFTLIYTVVPNKKVKIKHSAYGAFLAAIFFTLGKQAFTWYIVTFPSYQLIYGAMATLPIML
LWIQISWLVVLVGAQLASTLDEIGEQIEQ

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family

Homologues:

Organism=Escherichia coli, GI1790319, Length=253, Percent_Identity=45.0592885375494, Blast_Score=244, Evalue=3e-66,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1670_HAEIE (A5UAL3)

Other databases:

- EMBL:   CP000671
- RefSeq:   YP_001290197.1
- STRING:   A5UAL3
- GeneID:   5224973
- GenomeReviews:   CP000671_GR
- KEGG:   hip:CGSHiEE_01670
- eggNOG:   COG1295
- HOGENOM:   HBG451793
- OMA:   FDPKEVF
- ProtClustDB:   PRK01637
- BioCyc:   HINF374930:CGSHIEE_01670-MONOMER
- HAMAP:   MF_00672
- InterPro:   IPR017039
- InterPro:   IPR004664
- PIRSF:   PIRSF035875
- TIGRFAMs:   TIGR00765

Pfam domain/function: PF03631 Ribonuclease_BN

EC number: 3.1.-.- [C]

Molecular weight: Translated: 30225; Mature: 30225

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x12458d24)-; HASH(0x123325a0)-; HASH(0x11e6dcf8)-; HASH(0x121ecf1c)-; HASH(0x1075e294)-; HASH(0x1227672c)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHCH
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA