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The map label for this gene is kdkA [H]

Identifier: 148827417

GI number: 148827417

Start: 768799

End: 769524

Strand: Reverse

Name: kdkA [H]

Synonym: CGSHiGG_04085

Alternate gene names: 148827417

Gene position: 769524-768799 (Counterclockwise)

Preceding gene: 148827421

Following gene: 148827416

Centisome position: 40.78

GC content: 37.33

Gene sequence:

>726_bases
ATGTACCAATTCCAACAAGATAACCAATATTTTATCTTTAATTTTGACCGCACTTTTGACCAAGCAACCGAGTTTTTCCA
AGCAGAATTTTGGCAAAAACAAGAACGAGTGATAGGGAGTGCAAAAGGTCGAGGCACCACTTATTTCTTGCAAACCGAAG
ATTGGTTTGGTGTAAATTGTGCGTTGCGTCATTATTATCGCGGCGGACTTTGGGGTAAACTGAACAAAGATCGTTATCGT
TTTTCTGATCTTGAAACTACCCGTAGTTTTGCTGAGTTTCATTTGTTGCAACGTTTGTATGAAGCAGGTTTTCCTGTGCC
TAAACCCATTGCTGCACGTATTCAAAAAGGCAAGTTAGGTATTTGCTATCAAGCGGATATTTTGACGGAAAAAATCGAAA
ACGCACAGGATTTAACCGCACTTTTACAAACACAAACATTGCCAAAAGAAACTTGGACGCAAATTGGTCGTTTGATTCGA
AAACTACATGATTTACAGATTTGCCATACAGACCTGAATGCACATAATATTTTGCTTCAACAAATTGAACAAGAGCAAAA
ATGTTGGTTACTGGATTTTGATAAGTGCGGCGAAAAATCTGGAGATTTTTGGAAAGTGCAAAATCTGAACCGTTTAAAAC
GTTCCTTTGAAAAAGAAATTAGACGAATGAATATTCAATTTACCGAGCAAAACTGGGCTGATTTAACAGCAGCTTATCAT
CAATAA

Upstream 100 bases:

>100_bases
TGGAGCTTCGGTAAAAAGTGGCATTAACGTTCCTTTATCATTTAATTTGTGCCTATTTTAAAGTAGAATGACCCCATTTT
CTATTCATAACAACGTTCTA

Downstream 100 bases:

>100_bases
AGGATTGATTATGAAACAAAAAATCGTACTTGCTACAGGCAATAAAGGAAAAGTAAAAGAAATGGCTGATGTCCTATCTG
ATTTTGGTTTTGAAGTGATT

Product: 3-deoxy-D-manno-octulosonic-acid kinase

Products: NA

Alternate protein names: KDO kinase [H]

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MYQFQQDNQYFIFNFDRTFDQATEFFQAEFWQKQERVIGSAKGRGTTYFLQTEDWFGVNCALRHYYRGGLWGKLNKDRYR
FSDLETTRSFAEFHLLQRLYEAGFPVPKPIAARIQKGKLGICYQADILTEKIENAQDLTALLQTQTLPKETWTQIGRLIR
KLHDLQICHTDLNAHNILLQQIEQEQKCWLLDFDKCGEKSGDFWKVQNLNRLKRSFEKEIRRMNIQFTEQNWADLTAAYH
Q

Sequences:

>Translated_241_residues
MYQFQQDNQYFIFNFDRTFDQATEFFQAEFWQKQERVIGSAKGRGTTYFLQTEDWFGVNCALRHYYRGGLWGKLNKDRYR
FSDLETTRSFAEFHLLQRLYEAGFPVPKPIAARIQKGKLGICYQADILTEKIENAQDLTALLQTQTLPKETWTQIGRLIR
KLHDLQICHTDLNAHNILLQQIEQEQKCWLLDFDKCGEKSGDFWKVQNLNRLKRSFEKEIRRMNIQFTEQNWADLTAAYH
Q
>Mature_241_residues
MYQFQQDNQYFIFNFDRTFDQATEFFQAEFWQKQERVIGSAKGRGTTYFLQTEDWFGVNCALRHYYRGGLWGKLNKDRYR
FSDLETTRSFAEFHLLQRLYEAGFPVPKPIAARIQKGKLGICYQADILTEKIENAQDLTALLQTQTLPKETWTQIGRLIR
KLHDLQICHTDLNAHNILLQQIEQEQKCWLLDFDKCGEKSGDFWKVQNLNRLKRSFEKEIRRMNIQFTEQNWADLTAAYH
Q

Specific function: ATP-dependent phosphorylation of 3-deoxy-D-manno- octulosonic acid at the 4-OH position [H]

COG id: COG0515

COG function: function code RTKL; Serine/threonine protein kinase

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the protein kinase superfamily. KdkA/rfaP family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022826
- InterPro:   IPR011009
- InterPro:   IPR010440 [H]

Pfam domain/function: PF06293 Kdo [H]

EC number: NA

Molecular weight: Translated: 28785; Mature: 28785

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYQFQQDNQYFIFNFDRTFDQATEFFQAEFWQKQERVIGSAKGRGTTYFLQTEDWFGVNC
CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHH
ALRHYYRGGLWGKLNKDRYRFSDLETTRSFAEFHLLQRLYEAGFPVPKPIAARIQKGKLG
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCE
ICYQADILTEKIENAQDLTALLQTQTLPKETWTQIGRLIRKLHDLQICHTDLNAHNILLQ
EEEEHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
QIEQEQKCWLLDFDKCGEKSGDFWKVQNLNRLKRSFEKEIRRMNIQFTEQNWADLTAAYH
HHHHHCCCEEEEHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHC
Q
C
>Mature Secondary Structure
MYQFQQDNQYFIFNFDRTFDQATEFFQAEFWQKQERVIGSAKGRGTTYFLQTEDWFGVNC
CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHH
ALRHYYRGGLWGKLNKDRYRFSDLETTRSFAEFHLLQRLYEAGFPVPKPIAARIQKGKLG
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCE
ICYQADILTEKIENAQDLTALLQTQTLPKETWTQIGRLIRKLHDLQICHTDLNAHNILLQ
EEEEHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
QIEQEQKCWLLDFDKCGEKSGDFWKVQNLNRLKRSFEKEIRRMNIQFTEQNWADLTAAYH
HHHHHCCCEEEEHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHC
Q
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA