Click here to switch to the map view.

The map label for this gene is 148827390

Identifier: 148827390

GI number: 148827390

Start: 745198

End: 746280

Strand: Reverse

Name: 148827390

Synonym: CGSHiGG_03920

Alternate gene names: NA

Gene position: 746280-745198 (Counterclockwise)

Preceding gene: 148827391

Following gene: 148827386

Centisome position: 39.54

GC content: 34.26

Gene sequence:

>1083_bases
ATGCAAAATCAATCTGATTTTAAAATACTGTCATTATCTGGTGGTGGTTATCGTGGTTTATATACTGCTGAAGTATTAAA
AGAGTTGGAAAACTATTTAAAAAATGAAGGTAAAAATAATTGCATTGCCAATTATTTTAATTTAATTACAGGTACATCGA
TTGGTGGTATTATTGCATTGGCATTAGCTTATGAAATTCCTGCTGAAGAAATTGCCAAAATATTTGATAATAAAGGTCAA
GAAATTTTTAAGAAACAATCTTGTATTGGCATATTTAAGGCAAAATATAATTCAGCTATTTTAAAAAATATTTTAGTCGA
CTGGTTTGGTGATGCTTCAATTGGTGATTTAAAACATCCGGTAGTTATTCCAGCTGTGGATTATACAACGGGCTTCCCTG
TTACATTTAAAACAGCTCATCACGATACATTTAAGCGAGATTGGAAACAGAAGATTGTTGATGTGGCATTAGCAACTTCG
GCAGCACCAACTTATTTTAAACGCCATCGTATTGGAGAAAATGAATATATTGATGGTGGATTGTTTGTCAATAGCCCAAG
TTTGGTTGGATTACACGAAGCTGAAATCTTTTTTCAACACCCTATAAATCAAGTCAGAATCTTGTCTATTGGTACATTAT
CATCTAAGAAAACCATCAATCCAAAGACCAATCAAAAAGGTGGCTTGACCGACTGGGGGGAAGGAGATATTAGAAAAGCC
GCTCCTAACATTATTGATATTACGCTCAGTTCTCAACAATTATTTATGAATCAGTTGGTCAAACACAGAATTGAGGATAA
TTTTGTTGTTATTGATGAAAACTTAACTCACAGCTCAGCCCCCTATGTTGGATTAGATGATGCCACCAATGAGGCAAAAC
AAATCCTTAAAGGAAATGCTAGCCGGTCCTCAAAAGTTGCACTTGGAAACCCCGAGGCTTTGGCATTTTTTAATGAAATA
GCTATTCCACCTGTATTTTATGAAGGGAAATATAAAACCAATAGTCGAGTTTATATTCACACTATAGCCACTTTAAACGC
ACTCTGTCATCGGAATTTTGATGTTAATGAGCATTGTAACTAA

Upstream 100 bases:

>100_bases
AATAATTACCAAACTCGTTACAACTCTGAATATCAAAATGAGAAAATTAATGATCTGTTAATTATGGCAAACGTAAACTG
CCCTTATTGTGGAGAAAAAT

Downstream 100 bases:

>100_bases
AAACTCCGTTTTACTAGTGGAATTCTTCGTGGTTGAACAACGCTAACAAGGACTGACACGCTATCAAGCCTTAATTCAAT
CAGGCTTGGAACGCGTCTGC

Product: patatin

Products: NA

Alternate protein names: Patatin Family Protein; Patatin-Related Protein; Patatin-Like Phospholipase; Phospholipase Patatin Family; Patatin-Like Phospholipase Family; Phospholipase; Patatin-Like Protein; Patatin Family Phospholipase

Number of amino acids: Translated: 360; Mature: 360

Protein sequence:

>360_residues
MQNQSDFKILSLSGGGYRGLYTAEVLKELENYLKNEGKNNCIANYFNLITGTSIGGIIALALAYEIPAEEIAKIFDNKGQ
EIFKKQSCIGIFKAKYNSAILKNILVDWFGDASIGDLKHPVVIPAVDYTTGFPVTFKTAHHDTFKRDWKQKIVDVALATS
AAPTYFKRHRIGENEYIDGGLFVNSPSLVGLHEAEIFFQHPINQVRILSIGTLSSKKTINPKTNQKGGLTDWGEGDIRKA
APNIIDITLSSQQLFMNQLVKHRIEDNFVVIDENLTHSSAPYVGLDDATNEAKQILKGNASRSSKVALGNPEALAFFNEI
AIPPVFYEGKYKTNSRVYIHTIATLNALCHRNFDVNEHCN

Sequences:

>Translated_360_residues
MQNQSDFKILSLSGGGYRGLYTAEVLKELENYLKNEGKNNCIANYFNLITGTSIGGIIALALAYEIPAEEIAKIFDNKGQ
EIFKKQSCIGIFKAKYNSAILKNILVDWFGDASIGDLKHPVVIPAVDYTTGFPVTFKTAHHDTFKRDWKQKIVDVALATS
AAPTYFKRHRIGENEYIDGGLFVNSPSLVGLHEAEIFFQHPINQVRILSIGTLSSKKTINPKTNQKGGLTDWGEGDIRKA
APNIIDITLSSQQLFMNQLVKHRIEDNFVVIDENLTHSSAPYVGLDDATNEAKQILKGNASRSSKVALGNPEALAFFNEI
AIPPVFYEGKYKTNSRVYIHTIATLNALCHRNFDVNEHCN
>Mature_360_residues
MQNQSDFKILSLSGGGYRGLYTAEVLKELENYLKNEGKNNCIANYFNLITGTSIGGIIALALAYEIPAEEIAKIFDNKGQ
EIFKKQSCIGIFKAKYNSAILKNILVDWFGDASIGDLKHPVVIPAVDYTTGFPVTFKTAHHDTFKRDWKQKIVDVALATS
AAPTYFKRHRIGENEYIDGGLFVNSPSLVGLHEAEIFFQHPINQVRILSIGTLSSKKTINPKTNQKGGLTDWGEGDIRKA
APNIIDITLSSQQLFMNQLVKHRIEDNFVVIDENLTHSSAPYVGLDDATNEAKQILKGNASRSSKVALGNPEALAFFNEI
AIPPVFYEGKYKTNSRVYIHTIATLNALCHRNFDVNEHCN

Specific function: Unknown

COG id: COG3621

COG function: function code R; Patatin

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI48525351, Length=226, Percent_Identity=27.4336283185841, Blast_Score=81, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17544092, Length=233, Percent_Identity=26.6094420600858, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI45550585, Length=205, Percent_Identity=28.2926829268293, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI45551543, Length=205, Percent_Identity=28.2926829268293, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI45551542, Length=205, Percent_Identity=28.2926829268293, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI45551541, Length=205, Percent_Identity=28.2926829268293, Blast_Score=72, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39999; Mature: 39999

Theoretical pI: Translated: 7.68; Mature: 7.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNQSDFKILSLSGGGYRGLYTAEVLKELENYLKNEGKNNCIANYFNLITGTSIGGIIAL
CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHH
ALAYEIPAEEIAKIFDNKGQEIFKKQSCIGIFKAKYNSAILKNILVDWFGDASIGDLKHP
HHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
VVIPAVDYTTGFPVTFKTAHHDTFKRDWKQKIVDVALATSAAPTYFKRHRIGENEYIDGG
EEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCEECCC
LFVNSPSLVGLHEAEIFFQHPINQVRILSIGTLSSKKTINPKTNQKGGLTDWGEGDIRKA
EEECCCCEEEEHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHC
APNIIDITLSSQQLFMNQLVKHRIEDNFVVIDENLTHSSAPYVGLDDATNEAKQILKGNA
CCCEEEEEECHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEECCCCCHHHHHHHHCCCC
SRSSKVALGNPEALAFFNEIAIPPVFYEGKYKTNSRVYIHTIATLNALCHRNFDVNEHCN
CCCCEEECCCCHHHHHHHHHCCCCEEECCCCCCCCEEEEEEHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MQNQSDFKILSLSGGGYRGLYTAEVLKELENYLKNEGKNNCIANYFNLITGTSIGGIIAL
CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHH
ALAYEIPAEEIAKIFDNKGQEIFKKQSCIGIFKAKYNSAILKNILVDWFGDASIGDLKHP
HHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
VVIPAVDYTTGFPVTFKTAHHDTFKRDWKQKIVDVALATSAAPTYFKRHRIGENEYIDGG
EEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCEECCC
LFVNSPSLVGLHEAEIFFQHPINQVRILSIGTLSSKKTINPKTNQKGGLTDWGEGDIRKA
EEECCCCEEEEHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHC
APNIIDITLSSQQLFMNQLVKHRIEDNFVVIDENLTHSSAPYVGLDDATNEAKQILKGNA
CCCEEEEEECHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEECCCCCHHHHHHHHCCCC
SRSSKVALGNPEALAFFNEIAIPPVFYEGKYKTNSRVYIHTIATLNALCHRNFDVNEHCN
CCCCEEECCCCHHHHHHHHHCCCCEEECCCCCCCCEEEEEEHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA