Click here to switch to the map view.

The map label for this gene is ybeD [C]

Identifier: 148827186

GI number: 148827186

Start: 482674

End: 482952

Strand: Reverse

Name: ybeD [C]

Synonym: CGSHiGG_02625

Alternate gene names: 148827186

Gene position: 482952-482674 (Counterclockwise)

Preceding gene: 148827187

Following gene: 148827185

Centisome position: 25.59

GC content: 32.62

Gene sequence:

>279_bases
ATGACAATAGAAAACGATTATGCAAAACTCAAGGAATTAATGGAATTTCCAGCAAAAATGACTTTTAAAGTTGCGGGAAT
TAATCGAGAAGGGTTAGCACAAGATCTTATACAAGTGGTGCAAAAATATATTAAAGGCGATTATATTCCAAAAGAAAAGC
GCAGTAGTAAAGGCACTTATAATTCAGTTTCAATTGATATTATTGCTGAAAACTTTGATCAGGTAGAAACGCTCTATAAA
GAACTGGCTAAAGTTGAAGGCGTGAAAATGGTTATTTAG

Upstream 100 bases:

>100_bases
CTATGGGATTGGTTAGTATTGACTGTGAAAGGGTTATTCTCATAAAAACAAGTTGAAAATTGACCGCACTTTTTGATTTA
TTTTATTTTTAGGAAAGAAA

Downstream 100 bases:

>100_bases
TATGAACAATTCCCTTATCGTTCGTCAGTTAGGATTGCAAGATTATCAAGAAATTTGGCACAAAATGCAGGATTTTACTG
ATACTCGAAATGCTGAAACG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 92; Mature: 91

Protein sequence:

>92_residues
MTIENDYAKLKELMEFPAKMTFKVAGINREGLAQDLIQVVQKYIKGDYIPKEKRSSKGTYNSVSIDIIAENFDQVETLYK
ELAKVEGVKMVI

Sequences:

>Translated_92_residues
MTIENDYAKLKELMEFPAKMTFKVAGINREGLAQDLIQVVQKYIKGDYIPKEKRSSKGTYNSVSIDIIAENFDQVETLYK
ELAKVEGVKMVI
>Mature_91_residues
TIENDYAKLKELMEFPAKMTFKVAGINREGLAQDLIQVVQKYIKGDYIPKEKRSSKGTYNSVSIDIIAENFDQVETLYKE
LAKVEGVKMVI

Specific function: Unknown

COG id: COG2921

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0250 family

Homologues:

Organism=Escherichia coli, GI1786850, Length=85, Percent_Identity=50.5882352941176, Blast_Score=88, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y028_HAEIN (P44465)

Other databases:

- EMBL:   L42023
- PIR:   F64140
- RefSeq:   NP_438201.1
- ProteinModelPortal:   P44465
- SMR:   P44465
- GeneID:   950924
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0028
- TIGR:   HI_0028
- HOGENOM:   HBG297220
- OMA:   TSKEHIE
- ProtClustDB:   PRK04998
- BioCyc:   HINF71421:HI_0028-MONOMER
- HAMAP:   MF_00659
- InterPro:   IPR007454

Pfam domain/function: PF04359 DUF493

EC number: NA

Molecular weight: Translated: 10506; Mature: 10375

Theoretical pI: Translated: 6.84; Mature: 6.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIENDYAKLKELMEFPAKMTFKVAGINREGLAQDLIQVVQKYIKGDYIPKEKRSSKGTY
CCCCHHHHHHHHHHHCCHHHEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
NSVSIDIIAENFDQVETLYKELAKVEGVKMVI
CCEEEEHHHCCHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TIENDYAKLKELMEFPAKMTFKVAGINREGLAQDLIQVVQKYIKGDYIPKEKRSSKGTY
CCCHHHHHHHHHHHCCHHHEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
NSVSIDIIAENFDQVETLYKELAKVEGVKMVI
CCEEEEHHHCCHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 9719565; 10675023