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The map label for this gene is pdxS [H]

Identifier: 148827072

GI number: 148827072

Start: 339375

End: 340250

Strand: Direct

Name: pdxS [H]

Synonym: CGSHiGG_01915

Alternate gene names: 148827072

Gene position: 339375-340250 (Clockwise)

Preceding gene: 148827064

Following gene: 148827073

Centisome position: 17.98

GC content: 43.26

Gene sequence:

>876_bases
ATGGCTGAAAATCGTTATGAACTAAATAAAAACTTAGCACAGATGCTCAAAGGTGGTGTTATCATGGATGTTCAAAACCC
TGAACAAGCTCGCATTGCAGAAGCTGCTGGTGCAGCTGCAGTGATGGCTTTGGAACGAATTCCTGCAGATATTCGTGCTG
TTGGAGGTGTCTCTCGAATGAGCGATCCTAAGATGATCAAGGAAATCCAAGGAGCAGTTAGCATTCCAGTTATGGCAAAA
GTTAGAATTGGACATTTCGTTGAGGCTCAGATTTTGGAAGCTATTGAAATTGACTATATCGATGAGAGTGAAGTGCTTTC
TCCAGCTGACAACCGTTTCCATGTGGACAAGAAAGAATTCCAAGTACCTTTTGTATGTGGTGCCAAGGATTTGGGCGAGG
CCTTGCGTCGTATCGCTGAAGGGGCTTCAATGATTCGTACAAAAGGAGAACCAGGAACAGGAGATATCGTCCAAGCTGTT
CGCCATATGCGCATGATGAGTCAAGAAATTCGTCGCATTCAAAATTTACGTGAGGACGAGCTCTATGTTGCGGCCAAAGA
TTTACAAGTTCCTGTAGAATTGGTTCAATACGTCCATAAGAATGGGAAATTGCCAGTTGTCAACTTCGCAGCTGGAGGAA
TTGCAACTCCAGCAGATGCGGCCTTGATGATGCAACTTGGCGCAGAGGGTGTCTTTGTTGGTTCAGGTATTTTTAAGTCA
GGAGATCCTATAAAACGTGCGAGTGCTATTGTCAAAGCTGTAACTAACTATCAAAATCCACAAATCCTAGCAAAAATCTC
CGAAGATTTAGGTGAAGCCATGGTTGGTATCAATGAAAATGAAATCCAAATTCTCATGGCTGAGCGAGGAAAATAA

Upstream 100 bases:

>100_bases
AATATATACGCATTTTTTCAAACTTGTTCTAAAGACTTTTCTACATTACAATAAAAAACGTAGCTATCAATACAAATAAT
CAAATAATGAGGACAAAGAA

Downstream 100 bases:

>100_bases
ATGAAAATCGGAATATTAGCTCTACAAGGTGCCTTTGCGGAACATGCACAAATGCTAGAAAAATTAGGAATTGAAAGTGT
CGAACTGAGAAATTTAAAAA

Product: pyridoxal biosynthesis lyase PdxS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 290

Protein sequence:

>291_residues
MAENRYELNKNLAQMLKGGVIMDVQNPEQARIAEAAGAAAVMALERIPADIRAVGGVSRMSDPKMIKEIQGAVSIPVMAK
VRIGHFVEAQILEAIEIDYIDESEVLSPADNRFHVDKKEFQVPFVCGAKDLGEALRRIAEGASMIRTKGEPGTGDIVQAV
RHMRMMSQEIRRIQNLREDELYVAAKDLQVPVELVQYVHKNGKLPVVNFAAGGIATPADAALMMQLGAEGVFVGSGIFKS
GDPIKRASAIVKAVTNYQNPQILAKISEDLGEAMVGINENEIQILMAERGK

Sequences:

>Translated_291_residues
MAENRYELNKNLAQMLKGGVIMDVQNPEQARIAEAAGAAAVMALERIPADIRAVGGVSRMSDPKMIKEIQGAVSIPVMAK
VRIGHFVEAQILEAIEIDYIDESEVLSPADNRFHVDKKEFQVPFVCGAKDLGEALRRIAEGASMIRTKGEPGTGDIVQAV
RHMRMMSQEIRRIQNLREDELYVAAKDLQVPVELVQYVHKNGKLPVVNFAAGGIATPADAALMMQLGAEGVFVGSGIFKS
GDPIKRASAIVKAVTNYQNPQILAKISEDLGEAMVGINENEIQILMAERGK
>Mature_290_residues
AENRYELNKNLAQMLKGGVIMDVQNPEQARIAEAAGAAAVMALERIPADIRAVGGVSRMSDPKMIKEIQGAVSIPVMAKV
RIGHFVEAQILEAIEIDYIDESEVLSPADNRFHVDKKEFQVPFVCGAKDLGEALRRIAEGASMIRTKGEPGTGDIVQAVR
HMRMMSQEIRRIQNLREDELYVAAKDLQVPVELVQYVHKNGKLPVVNFAAGGIATPADAALMMQLGAEGVFVGSGIFKSG
DPIKRASAIVKAVTNYQNPQILAKISEDLGEAMVGINENEIQILMAERGK

Specific function: Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring [H]

COG id: COG0214

COG function: function code H; Pyridoxine biosynthesis enzyme

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pdxS/SNZ family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323743, Length=279, Percent_Identity=64.8745519713262, Blast_Score=380, Evalue=1e-106,
Organism=Saccharomyces cerevisiae, GI6323996, Length=277, Percent_Identity=67.1480144404332, Blast_Score=371, Evalue=1e-104,
Organism=Saccharomyces cerevisiae, GI6321049, Length=277, Percent_Identity=66.7870036101083, Blast_Score=370, Evalue=1e-103,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011060
- InterPro:   IPR001852 [H]

Pfam domain/function: PF01680 SOR_SNZ [H]

EC number: NA

Molecular weight: Translated: 31631; Mature: 31500

Theoretical pI: Translated: 5.49; Mature: 5.49

Prosite motif: PS01235 PDXS_SNZ_1 ; PS51129 PDXS_SNZ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAENRYELNKNLAQMLKGGVIMDVQNPEQARIAEAAGAAAVMALERIPADIRAVGGVSRM
CCCCHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCC
SDPKMIKEIQGAVSIPVMAKVRIGHFVEAQILEAIEIDYIDESEVLSPADNRFHVDKKEF
CCHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCEECCHHHC
QVPFVCGAKDLGEALRRIAEGASMIRTKGEPGTGDIVQAVRHMRMMSQEIRRIQNLREDE
CCCEEECCHHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
LYVAAKDLQVPVELVQYVHKNGKLPVVNFAAGGIATPADAALMMQLGAEGVFVGSGIFKS
EEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCC
GDPIKRASAIVKAVTNYQNPQILAKISEDLGEAMVGINENEIQILMAERGK
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC
>Mature Secondary Structure 
AENRYELNKNLAQMLKGGVIMDVQNPEQARIAEAAGAAAVMALERIPADIRAVGGVSRM
CCCHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCC
SDPKMIKEIQGAVSIPVMAKVRIGHFVEAQILEAIEIDYIDESEVLSPADNRFHVDKKEF
CCHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCEECCHHHC
QVPFVCGAKDLGEALRRIAEGASMIRTKGEPGTGDIVQAVRHMRMMSQEIRRIQNLREDE
CCCEEECCHHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
LYVAAKDLQVPVELVQYVHKNGKLPVVNFAAGGIATPADAALMMQLGAEGVFVGSGIFKS
EEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCC
GDPIKRASAIVKAVTNYQNPQILAKISEDLGEAMVGINENEIQILMAERGK
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA