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The map label for this gene is nusB [H]

Identifier: 148827000

GI number: 148827000

Start: 242699

End: 243133

Strand: Reverse

Name: nusB [H]

Synonym: CGSHiGG_01440

Alternate gene names: 148827000

Gene position: 243133-242699 (Counterclockwise)

Preceding gene: 148827001

Following gene: 148826999

Centisome position: 12.88

GC content: 38.16

Gene sequence:

>435_bases
ATGACAGAACAAAAACAAGTGAAAAAGCCTTCTGCTCGTCGTCGTGCGCGTGAGTGTACTGTTCAAGCCTTGTATTCTTG
GGCGGTATCCGGTAATACTGCAGAACAAGTGGAATTAGCCTTTGTGTTAGATCAAGATATGGATGGGGTAGATAAACCTT
ACTTTCGTAAATTATTTCGTCAAACAATAGAAAATATTGAAACCGTTGATTTTTCAATTTCGCCTTATATTGACCGCGCT
TTTGATGAGCTTGATCCTATTGAAACGGCAATTTTACGTTTGGCTGTTTATGAATTACGCTTTGAATTAGATGTGCCATA
TAAAGTGGTTATCAATGAAGCGATTGAAGTGGCAAAAGTATTCGGTGCAGATGAAAGCCATAAATATATCAATGGCGTAC
TTGATAAAATCGCACCAGCATTAGGGCGTAAATAA

Upstream 100 bases:

>100_bases
TGAACGTGCTGGTACTAAAGCAGGAAATAAAGGTGCAGAAGCAGCCTTAACTGCACTTGAAATGGTTAATCTTATTCAAC
AAATTGATGCGGCATAAATC

Downstream 100 bases:

>100_bases
TCCTTTTAAACTGAGAATGGCGCGCGTTTTTAATGCGTGCCTTTTCTTTTATAAGATAGGTGGAAAAATGGCAATGGGTG
AATTTGATTTAATTAAACGA

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 144; Mature: 143

Protein sequence:

>144_residues
MTEQKQVKKPSARRRARECTVQALYSWAVSGNTAEQVELAFVLDQDMDGVDKPYFRKLFRQTIENIETVDFSISPYIDRA
FDELDPIETAILRLAVYELRFELDVPYKVVINEAIEVAKVFGADESHKYINGVLDKIAPALGRK

Sequences:

>Translated_144_residues
MTEQKQVKKPSARRRARECTVQALYSWAVSGNTAEQVELAFVLDQDMDGVDKPYFRKLFRQTIENIETVDFSISPYIDRA
FDELDPIETAILRLAVYELRFELDVPYKVVINEAIEVAKVFGADESHKYINGVLDKIAPALGRK
>Mature_143_residues
TEQKQVKKPSARRRARECTVQALYSWAVSGNTAEQVELAFVLDQDMDGVDKPYFRKLFRQTIENIETVDFSISPYIDRAF
DELDPIETAILRLAVYELRFELDVPYKVVINEAIEVAKVFGADESHKYINGVLDKIAPALGRK

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

Organism=Escherichia coli, GI1786618, Length=133, Percent_Identity=54.8872180451128, Blast_Score=136, Evalue=5e-34,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 16486; Mature: 16355

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEQKQVKKPSARRRARECTVQALYSWAVSGNTAEQVELAFVLDQDMDGVDKPYFRKLFR
CCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEEEECCCCCCCCCHHHHHHHH
QTIENIETVDFSISPYIDRAFDELDPIETAILRLAVYELRFELDVPYKVVINEAIEVAKV
HHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
FGADESHKYINGVLDKIAPALGRK
HCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TEQKQVKKPSARRRARECTVQALYSWAVSGNTAEQVELAFVLDQDMDGVDKPYFRKLFR
CCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEEEECCCCCCCCCHHHHHHHH
QTIENIETVDFSISPYIDRAFDELDPIETAILRLAVYELRFELDVPYKVVINEAIEVAKV
HHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
FGADESHKYINGVLDKIAPALGRK
HCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA