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The map label for this gene is ihfA [H]

Identifier: 148826992

GI number: 148826992

Start: 234820

End: 235110

Strand: Reverse

Name: ihfA [H]

Synonym: CGSHiGG_01390

Alternate gene names: 148826992

Gene position: 235110-234820 (Counterclockwise)

Preceding gene: 148826993

Following gene: 148826991

Centisome position: 12.46

GC content: 38.14

Gene sequence:

>291_bases
ATGGCTACGATAACTAAACTTGATATTATTGAATATTTAAGCGATAAATATCACTTATCTAAACAAGATACGAAAAATGT
AGTGGAGAACTTTTTGGAAGAGATCCGCTTATCGCTAGAATTTGGTCAAGATGTGAAATTATCAGGATTTGGTAATTTTG
AACTACGCGATAAGTCATCTCGCCCAGGGCGTAACCCAAAAACAGGTGATGTTGTGCCAGTTTCTGCGCGCCGAGTTGTC
ACATTTAAACCAGGGCAAAAGTTACGTGCCCGTGTAGAAAAAACTAAATAG

Upstream 100 bases:

>100_bases
GATAATGAAAAAACACTTGAAGATGAAGAAATTAATGCAGTGATTTCAGCAGTATTAGCGGAGGTAAAACAACGCTTTAA
TGCTGAATTAAGGGATTAAT

Downstream 100 bases:

>100_bases
TAAGCAACAAAAAGTGCGGTGAATTTCTACCGCACTTTTCATATGAAAAGGTATGAAAGTATATAAAACATTTTTAATCG
CTACTGCCTCGCTGTTTTTA

Product: integration host factor subunit alpha

Products: NA

Alternate protein names: IHF-alpha [H]

Number of amino acids: Translated: 96; Mature: 95

Protein sequence:

>96_residues
MATITKLDIIEYLSDKYHLSKQDTKNVVENFLEEIRLSLEFGQDVKLSGFGNFELRDKSSRPGRNPKTGDVVPVSARRVV
TFKPGQKLRARVEKTK

Sequences:

>Translated_96_residues
MATITKLDIIEYLSDKYHLSKQDTKNVVENFLEEIRLSLEFGQDVKLSGFGNFELRDKSSRPGRNPKTGDVVPVSARRVV
TFKPGQKLRARVEKTK
>Mature_95_residues
ATITKLDIIEYLSDKYHLSKQDTKNVVENFLEEIRLSLEFGQDVKLSGFGNFELRDKSSRPGRNPKTGDVVPVSARRVVT
FKPGQKLRARVEKTK

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1788005, Length=91, Percent_Identity=65.9340659340659, Blast_Score=127, Evalue=1e-31,
Organism=Escherichia coli, GI1787141, Length=90, Percent_Identity=37.7777777777778, Blast_Score=69, Evalue=7e-14,
Organism=Escherichia coli, GI1790433, Length=86, Percent_Identity=36.046511627907, Blast_Score=64, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 10967; Mature: 10836

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATITKLDIIEYLSDKYHLSKQDTKNVVENFLEEIRLSLEFGQDVKLSGFGNFELRDKSS
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEECCCCC
RPGRNPKTGDVVPVSARRVVTFKPGQKLRARVEKTK
CCCCCCCCCCEEECCCCEEEEECCCHHHHHHHCCCC
>Mature Secondary Structure 
ATITKLDIIEYLSDKYHLSKQDTKNVVENFLEEIRLSLEFGQDVKLSGFGNFELRDKSS
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEECCCCC
RPGRNPKTGDVVPVSARRVVTFKPGQKLRARVEKTK
CCCCCCCCCCEEECCCCEEEEECCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA