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The map label for this gene is prtR [H]

Identifier: 148826910

GI number: 148826910

Start: 163231

End: 163872

Strand: Direct

Name: prtR [H]

Synonym: CGSHiGG_00920

Alternate gene names: 148826910

Gene position: 163231-163872 (Clockwise)

Preceding gene: 148826890

Following gene: 148826911

Centisome position: 8.65

GC content: 41.43

Gene sequence:

>642_bases
GTGGATTTACAAAAAGCTGTTGGCGTAACCTATGAAATGGCTAGACGTTACACTTTAGGCACTGCAACCCCGAGAGATAA
TAAAATTGAAGCTATAGCGAAGTACTTTGGAGTTACCCCTGCTCATTTGAAATACGGAACAGTCGATCCTTTAGAAAATC
AAGTAACTTCTAATGTGAAAGACGTTGGCTCATTCGACTTATGGGATCGCAATACTCCACTAAATAGCGATGAATACGCC
GTTCCGTTTTATCAAGATATTCGCCTTGCTGCCGGTAACGGATTTGCTGATGACATAGCGGACTATAACAACTTCAAATT
GCGTTTTTCCAAATCAACACTACGTAAACAAGGCGTACAGTACGAAAATGCGGTATGTGTGATTGCTGACGGAAACTCGA
TGGAGCCTGTTATTCCTGATGGAACAACGGTGGGAATTGATTTGGGCAATAAGACAATCCGAGACGGCAAGATTTACGCT
ATCAATCACGGTGGGCTATTACGGATCAAACTGCTCTACAATATGCCAAACGAACAAGTGAAAATACGTAGTTACAACAG
CGAAGAACACCCAGATGAGATAGCAGACATGCAAGATATATCAGTCATTGGGAAAGTCTTTTGGTATTCAGTTTTACTAT
AG

Upstream 100 bases:

>100_bases
TAATTTTGTATCTTCTACCTTTAGTAGAATAAAGGAGTGTCTATGACAGATTTAGCAAGCCGACTTAATGAATTAATGGA
TAAACAAGGCAAAAAATATT

Downstream 100 bases:

>100_bases
AAACTAACACTGGATATTGTTGATCTGTAATAACAACTAACCTAAGGAGTTAATATGATTAATGTAAACTTTCAAAATTA
CAGCTATTATCCTTTTTTAC

Product: transcriptional regulator

Products: NA

Alternate protein names: Pyocin repressor protein [H]

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MDLQKAVGVTYEMARRYTLGTATPRDNKIEAIAKYFGVTPAHLKYGTVDPLENQVTSNVKDVGSFDLWDRNTPLNSDEYA
VPFYQDIRLAAGNGFADDIADYNNFKLRFSKSTLRKQGVQYENAVCVIADGNSMEPVIPDGTTVGIDLGNKTIRDGKIYA
INHGGLLRIKLLYNMPNEQVKIRSYNSEEHPDEIADMQDISVIGKVFWYSVLL

Sequences:

>Translated_213_residues
MDLQKAVGVTYEMARRYTLGTATPRDNKIEAIAKYFGVTPAHLKYGTVDPLENQVTSNVKDVGSFDLWDRNTPLNSDEYA
VPFYQDIRLAAGNGFADDIADYNNFKLRFSKSTLRKQGVQYENAVCVIADGNSMEPVIPDGTTVGIDLGNKTIRDGKIYA
INHGGLLRIKLLYNMPNEQVKIRSYNSEEHPDEIADMQDISVIGKVFWYSVLL
>Mature_213_residues
MDLQKAVGVTYEMARRYTLGTATPRDNKIEAIAKYFGVTPAHLKYGTVDPLENQVTSNVKDVGSFDLWDRNTPLNSDEYA
VPFYQDIRLAAGNGFADDIADYNNFKLRFSKSTLRKQGVQYENAVCVIADGNSMEPVIPDGTTVGIDLGNKTIRDGKIYA
INHGGLLRIKLLYNMPNEQVKIRSYNSEEHPDEIADMQDISVIGKVFWYSVLL

Specific function: Represses the promoter activity of the prtN gene [H]

COG id: COG2932

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR019759
- InterPro:   IPR015927
- InterPro:   IPR011056 [H]

Pfam domain/function: PF01381 HTH_3; PF00717 Peptidase_S24 [H]

EC number: NA

Molecular weight: Translated: 23879; Mature: 23879

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLQKAVGVTYEMARRYTLGTATPRDNKIEAIAKYFGVTPAHLKYGTVDPLENQVTSNVK
CCCHHHHCHHHHHHHEEECCCCCCCCCHHHHHHHHHCCCHHHEECCCCCCHHHHHHHCHH
DVGSFDLWDRNTPLNSDEYAVPFYQDIRLAAGNGFADDIADYNNFKLRFSKSTLRKQGVQ
HCCCCCCCCCCCCCCCCCEECCHHHHEEEECCCCCHHHHCCCCCEEEEECHHHHHHCCCC
YENAVCVIADGNSMEPVIPDGTTVGIDLGNKTIRDGKIYAINHGGLLRIKLLYNMPNEQV
CCCEEEEEECCCCCCCCCCCCCEEEEECCCCEEECCEEEEECCCCEEEEEEEECCCCCEE
KIRSYNSEEHPDEIADMQDISVIGKVFWYSVLL
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDLQKAVGVTYEMARRYTLGTATPRDNKIEAIAKYFGVTPAHLKYGTVDPLENQVTSNVK
CCCHHHHCHHHHHHHEEECCCCCCCCCHHHHHHHHHCCCHHHEECCCCCCHHHHHHHCHH
DVGSFDLWDRNTPLNSDEYAVPFYQDIRLAAGNGFADDIADYNNFKLRFSKSTLRKQGVQ
HCCCCCCCCCCCCCCCCCEECCHHHHEEEECCCCCHHHHCCCCCEEEEECHHHHHHCCCC
YENAVCVIADGNSMEPVIPDGTTVGIDLGNKTIRDGKIYAINHGGLLRIKLLYNMPNEQV
CCCEEEEEECCCCCCCCCCCCCEEEEECCCCEEECCEEEEECCCCEEEEEEEECCCCCEE
KIRSYNSEEHPDEIADMQDISVIGKVFWYSVLL
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8444788; 10984043 [H]