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The map label for this gene is rpmH [H]

Identifier: 148826358

GI number: 148826358

Start: 1386133

End: 1388880

Strand: Direct

Name: rpmH [H]

Synonym: CGSHiEE_06995

Alternate gene names: 148826358

Gene position: 1386133-1388880 (Clockwise)

Preceding gene: 148826357

Following gene: 148826359

Centisome position: 76.45

GC content: 35.92

Gene sequence:

>2748_bases
ATGACTAAAAAACCCTATTTTCGCCTAAGTATTATTTCTTGTCTTTTAATTTCATGCTATGTAAAAGCAGAAACTCAAAG
TATAAAAGATACAAAAGAAGCTATATCATCTGAAGTGGACACTCAAAGTACAGAAGATTCAGAATTAGAAACTATCTCAG
TCACTGCAGAAAAAATAAGAGATCGTAAAGATAATGAAGTAACTGGACTTGGCAAAATTATAAAAACGAGTGAAAGTATC
AGCCGAGAACAAGTATTAAATATTCGTGATCTAACACGCTATGATCCAGGCATTTCAGTTGTAGAACAAGGTCGCGGTGC
AAGTTCTGGATATTCTATTCGTGGTATGGACAGAAATAGAGTTGCTTTATTAGTAGATGGTTTACCTCAAACGCAATCTT
ATGTAGTGCAAAGCCCTTTAGTTGCTCGTTCAGGATATTCTGGCACTGGTGCAATTAATGAAATTGAATATGAAAATGTA
AAAGCAGTCGAAATAAGCAAAGGGGGGAGTTCTTCTGAGTATGGTAATGGAGCACTAGCTGGTTCTGTAACATTTCAAAG
CAAATCCGCAGCCGATATCTTAGAAGGAGACAAATCATGGGGAATTCAAACTAAAAATGCTTATTCAAGCAAAAATAAAG
GCTTTACCCATTCTTTAGCTGTAGCAGGAAAACAAGGTGGATTTGAAGGGCTAGCCATTTACACTCAACGAAATTCGGAG
GAAACCCAAGTCCATAAAGATGCATTAAAAGGCGTACAAAGTTATAATCGATTCATCGCCAAAACAGATACATCTGCAGG
ATACTTTGTGATACAAGATGAGTGTCCAAATCCAAATGATTATGACAGTTGTATACCTTCAGCCAAACCACCTGCGATTT
TATCCACCCAAAGCGAAACTGTAAGCGTTTCAGATTATACAGGGGCTAACCGTATCAAACCTAATCCAATGAAATATGAA
AGTCAGTCTTGGTTTTTAAGAGGAGGTTATCATTTTTCTGAACAACACTATATTGGTGGTATTTTTGAATTCACACAACA
AAAATTTGATATCCGTGATATGACATTTCCCGCTTATTTAAGGTCAACAGAAGACAAGGATTTAGAAAAACCCTCTTTTT
ATCCAAAGCAAGATTATGGTGCATATCAACGTATTGGTGATGGCCGAGGCGTTAAATATGCAAGTGGGCTTTATTTCGAT
GAACACCATAGAAAACAGCGTGTAGGTATTGAATATATTTACGAAAATAAGAACAAAGCGGGCATCATTGACAAAGCAGT
GTTAAGTGCTAATCAGCAAAACATTATACTTGACAGTTATATGCAACATACGCATTGCAGTCTTTATCCTAATCCAAGTA
AGAATTGCCGCCCAACACTTGATAAACCTTATTCATTCTATCGTTCTGATAGAAATGTTTATAAAGAAAAACATAACATG
TTGCAATTGAATTTAGAGAAAAAAATTCAACAAAATTGGCTTACTCATCAAATTGTCTTCAATCTTGGTTTTGATGACTT
TACTTCAGCACTTCAGCATAAAGATTATTTAACTCGACGTGTTATCGCTACGGCAAAGAGTATTTCAGGGACAGTTGGTA
AAACTCAGCAACACAGAAATGGTTTCAAAGAACGACCTTACTTATACCCAACACCAAAAGCAGAGTTGGTAGGAGAAGAT
CATTGTAATTATCAAGGTAACTCCTCTAATTACAGAGACTGTAAAGTGCGGTTAATTAAAGGGAAAAATTATTATTTCGC
AGCACGCAATAATATGGCATTAGGGAAATACGTTGATTTAGGTTTAGGTATTCGGTATGACGTATCTCGTACAAAAGCTA
ATGAATCAACTATTAGTGTTGGTAAATTTAAAAATTTCTCTTGGAATACTGGTATTGTCATAAAACCAACGGAATGGCTT
GATCTTTCTTATCGCCTTTCTACTGGATTTAGAAATCCTAGTTTTGCTGAAATGTATGGATGGCGGTATGGTGGCAAGAA
TGACGAGGTTTATGTAGGTAAATTTCAGCCTGAAACATCTCGTAACCAAGAGTTTGGTCTCGCTCTAAAAGGGGATTTTG
GTAATATTGAGATCAGTCATTTTAGTAATGCTTATCGAAATCTTATCGCCTTTGCTGAAGAACTTAAAAATGGAAGGGGC
AAGGGCAATTATGGATATCATAATGCACAAAATGCAAAATTAGTTGGCGTAAATATAACTGCGCAATTAGATTTTAATGG
TTTATGGAAACGTATTCCCTACGGTTGGTATGCAACATTTGCTTATAACCGAGTAAAAGTTAAAGATCAAAAAATCAATG
CTGGTTTAGCCTCCGTAAGCAGTTATTTATTTGATGCCATTCAGCCCAGCCGTTATATCATTGGTTTAGGCTATGATCAT
CCAAGTAATACTTGGGGAATTAATACAATGTTTACTCAATCAAAAGCAAAATCTCAAAATGAATTGCTAGGAAAACGTGC
ATTGGGTAACAATTCAAGGGATGTAAAATCAACAAGAAAACTTACTCGGGCATGGCATATCTTAGATGTATCGGGTTATT
ACATGGCGAATAAAAATATTATGCTTCGATTAGGGATATATAATTTATTCAACTATCGCTATGTTACTTGGGAAGCGGTG
CGTCAAACAGCACAAGGTGCGGTCAATCAACATCAAAATGTTGGTAGCTATACTCGCTACGCAGCATCAGGACGAAACTA
TACCTTAACATTAGAAATGAAATTCTAA

Upstream 100 bases:

>100_bases
ATGCTCGTGCTGCCGTTGTGTTTGGAGCTAAAAAACAAGTAGAAACAAACAACAAGTAAAAACAACCAAGTAAAAACAAC
CAAGTAATGGAATACTAAAA

Downstream 100 bases:

>100_bases
ATTAAAATGCGCCAGATGGACTAGACATGCTATATCTATACCTTACTGGCGCATCTTTTTCTGTTCTATAATCTGGTTAA
GTGAAAAACCAAACTTGGAT

Product: 50S ribosomal protein L34

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 915; Mature: 914

Protein sequence:

>915_residues
MTKKPYFRLSIISCLLISCYVKAETQSIKDTKEAISSEVDTQSTEDSELETISVTAEKIRDRKDNEVTGLGKIIKTSESI
SREQVLNIRDLTRYDPGISVVEQGRGASSGYSIRGMDRNRVALLVDGLPQTQSYVVQSPLVARSGYSGTGAINEIEYENV
KAVEISKGGSSSEYGNGALAGSVTFQSKSAADILEGDKSWGIQTKNAYSSKNKGFTHSLAVAGKQGGFEGLAIYTQRNSE
ETQVHKDALKGVQSYNRFIAKTDTSAGYFVIQDECPNPNDYDSCIPSAKPPAILSTQSETVSVSDYTGANRIKPNPMKYE
SQSWFLRGGYHFSEQHYIGGIFEFTQQKFDIRDMTFPAYLRSTEDKDLEKPSFYPKQDYGAYQRIGDGRGVKYASGLYFD
EHHRKQRVGIEYIYENKNKAGIIDKAVLSANQQNIILDSYMQHTHCSLYPNPSKNCRPTLDKPYSFYRSDRNVYKEKHNM
LQLNLEKKIQQNWLTHQIVFNLGFDDFTSALQHKDYLTRRVIATAKSISGTVGKTQQHRNGFKERPYLYPTPKAELVGED
HCNYQGNSSNYRDCKVRLIKGKNYYFAARNNMALGKYVDLGLGIRYDVSRTKANESTISVGKFKNFSWNTGIVIKPTEWL
DLSYRLSTGFRNPSFAEMYGWRYGGKNDEVYVGKFQPETSRNQEFGLALKGDFGNIEISHFSNAYRNLIAFAEELKNGRG
KGNYGYHNAQNAKLVGVNITAQLDFNGLWKRIPYGWYATFAYNRVKVKDQKINAGLASVSSYLFDAIQPSRYIIGLGYDH
PSNTWGINTMFTQSKAKSQNELLGKRALGNNSRDVKSTRKLTRAWHILDVSGYYMANKNIMLRLGIYNLFNYRYVTWEAV
RQTAQGAVNQHQNVGSYTRYAASGRNYTLTLEMKF

Sequences:

>Translated_915_residues
MTKKPYFRLSIISCLLISCYVKAETQSIKDTKEAISSEVDTQSTEDSELETISVTAEKIRDRKDNEVTGLGKIIKTSESI
SREQVLNIRDLTRYDPGISVVEQGRGASSGYSIRGMDRNRVALLVDGLPQTQSYVVQSPLVARSGYSGTGAINEIEYENV
KAVEISKGGSSSEYGNGALAGSVTFQSKSAADILEGDKSWGIQTKNAYSSKNKGFTHSLAVAGKQGGFEGLAIYTQRNSE
ETQVHKDALKGVQSYNRFIAKTDTSAGYFVIQDECPNPNDYDSCIPSAKPPAILSTQSETVSVSDYTGANRIKPNPMKYE
SQSWFLRGGYHFSEQHYIGGIFEFTQQKFDIRDMTFPAYLRSTEDKDLEKPSFYPKQDYGAYQRIGDGRGVKYASGLYFD
EHHRKQRVGIEYIYENKNKAGIIDKAVLSANQQNIILDSYMQHTHCSLYPNPSKNCRPTLDKPYSFYRSDRNVYKEKHNM
LQLNLEKKIQQNWLTHQIVFNLGFDDFTSALQHKDYLTRRVIATAKSISGTVGKTQQHRNGFKERPYLYPTPKAELVGED
HCNYQGNSSNYRDCKVRLIKGKNYYFAARNNMALGKYVDLGLGIRYDVSRTKANESTISVGKFKNFSWNTGIVIKPTEWL
DLSYRLSTGFRNPSFAEMYGWRYGGKNDEVYVGKFQPETSRNQEFGLALKGDFGNIEISHFSNAYRNLIAFAEELKNGRG
KGNYGYHNAQNAKLVGVNITAQLDFNGLWKRIPYGWYATFAYNRVKVKDQKINAGLASVSSYLFDAIQPSRYIIGLGYDH
PSNTWGINTMFTQSKAKSQNELLGKRALGNNSRDVKSTRKLTRAWHILDVSGYYMANKNIMLRLGIYNLFNYRYVTWEAV
RQTAQGAVNQHQNVGSYTRYAASGRNYTLTLEMKF
>Mature_914_residues
TKKPYFRLSIISCLLISCYVKAETQSIKDTKEAISSEVDTQSTEDSELETISVTAEKIRDRKDNEVTGLGKIIKTSESIS
REQVLNIRDLTRYDPGISVVEQGRGASSGYSIRGMDRNRVALLVDGLPQTQSYVVQSPLVARSGYSGTGAINEIEYENVK
AVEISKGGSSSEYGNGALAGSVTFQSKSAADILEGDKSWGIQTKNAYSSKNKGFTHSLAVAGKQGGFEGLAIYTQRNSEE
TQVHKDALKGVQSYNRFIAKTDTSAGYFVIQDECPNPNDYDSCIPSAKPPAILSTQSETVSVSDYTGANRIKPNPMKYES
QSWFLRGGYHFSEQHYIGGIFEFTQQKFDIRDMTFPAYLRSTEDKDLEKPSFYPKQDYGAYQRIGDGRGVKYASGLYFDE
HHRKQRVGIEYIYENKNKAGIIDKAVLSANQQNIILDSYMQHTHCSLYPNPSKNCRPTLDKPYSFYRSDRNVYKEKHNML
QLNLEKKIQQNWLTHQIVFNLGFDDFTSALQHKDYLTRRVIATAKSISGTVGKTQQHRNGFKERPYLYPTPKAELVGEDH
CNYQGNSSNYRDCKVRLIKGKNYYFAARNNMALGKYVDLGLGIRYDVSRTKANESTISVGKFKNFSWNTGIVIKPTEWLD
LSYRLSTGFRNPSFAEMYGWRYGGKNDEVYVGKFQPETSRNQEFGLALKGDFGNIEISHFSNAYRNLIAFAEELKNGRGK
GNYGYHNAQNAKLVGVNITAQLDFNGLWKRIPYGWYATFAYNRVKVKDQKINAGLASVSSYLFDAIQPSRYIIGLGYDHP
SNTWGINTMFTQSKAKSQNELLGKRALGNNSRDVKSTRKLTRAWHILDVSGYYMANKNIMLRLGIYNLFNYRYVTWEAVR
QTAQGAVNQHQNVGSYTRYAASGRNYTLTLEMKF

Specific function: Acts as a transferrin receptor and is required for transferrin utilization [H]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531
- InterPro:   IPR010916
- InterPro:   IPR010949
- InterPro:   IPR010948
- InterPro:   IPR010917 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 103476; Mature: 103345

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00430 TONB_DEPENDENT_REC_1 ; PS01156 TONB_DEPENDENT_REC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKKPYFRLSIISCLLISCYVKAETQSIKDTKEAISSEVDTQSTEDSELETISVTAEKIR
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEHHHHH
DRKDNEVTGLGKIIKTSESISREQVLNIRDLTRYDPGISVVEQGRGASSGYSIRGMDRNR
CCCCCCHHHHHHHHHCHHHHCHHHHCCHHHHHHCCCCCHHHHCCCCCCCCCEEECCCCCC
VALLVDGLPQTQSYVVQSPLVARSGYSGTGAINEIEYENVKAVEISKGGSSSEYGNGALA
EEEEECCCCCCHHHHHCCCCEECCCCCCCCCCCEECCCCEEEEEEECCCCCCCCCCCEEE
GSVTFQSKSAADILEGDKSWGIQTKNAYSSKNKGFTHSLAVAGKQGGFEGLAIYTQRNSE
EEEEECCCCCHHHHCCCCCCCEECCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCC
ETQVHKDALKGVQSYNRFIAKTDTSAGYFVIQDECPNPNDYDSCIPSAKPPAILSTQSET
HHHHHHHHHHHHHHHHHEEEECCCCCCEEEEECCCCCCCCHHHHCCCCCCCEEEECCCCE
VSVSDYTGANRIKPNPMKYESQSWFLRGGYHFSEQHYIGGIFEFTQQKFDIRDMTFPAYL
EEEECCCCCCCCCCCCCCCCCCCEEEECCEEECCCCCCCHHHHHHHHCCCCCCCCCHHHH
RSTEDKDLEKPSFYPKQDYGAYQRIGDGRGVKYASGLYFDEHHRKQRVGIEYIYENKNKA
CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCEEHHHHHHHHCCEEEEEECCCCC
GIIDKAVLSANQQNIILDSYMQHTHCSLYPNPSKNCRPTLDKPYSFYRSDRNVYKEKHNM
CCHHHHHHCCCCCCEEHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCE
LQLNLEKKIQQNWLTHQIVFNLGFDDFTSALQHKDYLTRRVIATAKSISGTVGKTQQHRN
EEEEHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHC
GFKERPYLYPTPKAELVGEDHCNYQGNSSNYRDCKVRLIKGKNYYFAARNNMALGKYVDL
CCCCCCEECCCCCHHCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEECCCCEECCEEEE
GLGIRYDVSRTKANESTISVGKFKNFSWNTGIVIKPTEWLDLSYRLSTGFRNPSFAEMYG
CCCEEEECCCCCCCCCEEEECCCCCCCCCCCEEECCCHHEEEEEEEECCCCCCCHHHHHC
WRYGGKNDEVYVGKFQPETSRNQEFGLALKGDFGNIEISHFSNAYRNLIAFAEELKNGRG
EECCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCEEEHHHHHHHHHHHHHHHHHHCCCC
KGNYGYHNAQNAKLVGVNITAQLDFNGLWKRIPYGWYATFAYNRVKVKDQKINAGLASVS
CCCCCCCCCCCCEEEEEEEEEEECCCHHHHHCCCCEEEEEEEEEEEEECCHHHCHHHHHH
SYLFDAIQPSRYIIGLGYDHPSNTWGINTMFTQSKAKSQNELLGKRALGNNSRDVKSTRK
HHHHHHCCCCEEEEEECCCCCCCCCCCEEEEECHHHCHHHHHHHHHHCCCCCCHHHHHHH
LTRAWHILDVSGYYMANKNIMLRLGIYNLFNYRYVTWEAVRQTAQGAVNQHQNVGSYTRY
HHHHEEEEEECCEEEECCCEEEEEEEEHHHCEEEEEHHHHHHHHHHHHHHHCCCCCHHHH
AASGRNYTLTLEMKF
HCCCCCEEEEEEEEC
>Mature Secondary Structure 
TKKPYFRLSIISCLLISCYVKAETQSIKDTKEAISSEVDTQSTEDSELETISVTAEKIR
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEHHHHH
DRKDNEVTGLGKIIKTSESISREQVLNIRDLTRYDPGISVVEQGRGASSGYSIRGMDRNR
CCCCCCHHHHHHHHHCHHHHCHHHHCCHHHHHHCCCCCHHHHCCCCCCCCCEEECCCCCC
VALLVDGLPQTQSYVVQSPLVARSGYSGTGAINEIEYENVKAVEISKGGSSSEYGNGALA
EEEEECCCCCCHHHHHCCCCEECCCCCCCCCCCEECCCCEEEEEEECCCCCCCCCCCEEE
GSVTFQSKSAADILEGDKSWGIQTKNAYSSKNKGFTHSLAVAGKQGGFEGLAIYTQRNSE
EEEEECCCCCHHHHCCCCCCCEECCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCC
ETQVHKDALKGVQSYNRFIAKTDTSAGYFVIQDECPNPNDYDSCIPSAKPPAILSTQSET
HHHHHHHHHHHHHHHHHEEEECCCCCCEEEEECCCCCCCCHHHHCCCCCCCEEEECCCCE
VSVSDYTGANRIKPNPMKYESQSWFLRGGYHFSEQHYIGGIFEFTQQKFDIRDMTFPAYL
EEEECCCCCCCCCCCCCCCCCCCEEEECCEEECCCCCCCHHHHHHHHCCCCCCCCCHHHH
RSTEDKDLEKPSFYPKQDYGAYQRIGDGRGVKYASGLYFDEHHRKQRVGIEYIYENKNKA
CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCEEHHHHHHHHCCEEEEEECCCCC
GIIDKAVLSANQQNIILDSYMQHTHCSLYPNPSKNCRPTLDKPYSFYRSDRNVYKEKHNM
CCHHHHHHCCCCCCEEHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCE
LQLNLEKKIQQNWLTHQIVFNLGFDDFTSALQHKDYLTRRVIATAKSISGTVGKTQQHRN
EEEEHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHC
GFKERPYLYPTPKAELVGEDHCNYQGNSSNYRDCKVRLIKGKNYYFAARNNMALGKYVDL
CCCCCCEECCCCCHHCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEECCCCEECCEEEE
GLGIRYDVSRTKANESTISVGKFKNFSWNTGIVIKPTEWLDLSYRLSTGFRNPSFAEMYG
CCCEEEECCCCCCCCCEEEECCCCCCCCCCCEEECCCHHEEEEEEEECCCCCCCHHHHHC
WRYGGKNDEVYVGKFQPETSRNQEFGLALKGDFGNIEISHFSNAYRNLIAFAEELKNGRG
EECCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCEEEHHHHHHHHHHHHHHHHHHCCCC
KGNYGYHNAQNAKLVGVNITAQLDFNGLWKRIPYGWYATFAYNRVKVKDQKINAGLASVS
CCCCCCCCCCCCEEEEEEEEEEECCCHHHHHCCCCEEEEEEEEEEEEECCHHHCHHHHHH
SYLFDAIQPSRYIIGLGYDHPSNTWGINTMFTQSKAKSQNELLGKRALGNNSRDVKSTRK
HHHHHHCCCCEEEEEECCCCCCCCCCCEEEEECHHHCHHHHHHHHHHCCCCCCHHHHHHH
LTRAWHILDVSGYYMANKNIMLRLGIYNLFNYRYVTWEAVRQTAQGAVNQHQNVGSYTRY
HHHHEEEEEECCEEEECCCEEEEEEEEHHHCEEEEEHHHHHHHHHHHHHHHCCCCCHHHH
AASGRNYTLTLEMKF
HCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]