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The map label for this gene is ybgK [C]

Identifier: 148825732

GI number: 148825732

Start: 689211

End: 690140

Strand: Direct

Name: ybgK [C]

Synonym: CGSHiEE_03395

Alternate gene names: 148825732

Gene position: 689211-690140 (Clockwise)

Preceding gene: 148825731

Following gene: 148825733

Centisome position: 38.01

GC content: 40.65

Gene sequence:

>930_bases
ATGATTGATATTCTTGATGTGAAATCCCGCGCCACCATTCAAGATTTAGGGCGTTTTGGTTTACGCCGATTTGGCATTAG
CCATTGTGGGGCAATGGATAAATTAGCATTACGCGCAGGCAATATTTTATTGGGCAATGCAGAGAATGTTCCTGCCATTG
AAGTGCCTTTAGGCGGTATTACATTGCAATTTCAGCAAGATATGAATTTTTGTGTGACTGGTGCTTTTTATGAAATGATG
TTAGATGATAAGCCCGTTTTTGCTTATTGGCGTTATCAAGTGCGAGCAGGTCAAATATTAAAAATGACACGTGCAAAAAT
TGGAATGTATGGTTATTTATGTGTTCAAGGTGGTTTTGTTTTGCCTCAAGCATTGAATTCTTGCAGCACGGATTTGAGAG
CGGAAATAGGGGGCATTGAGGGGCGTTGTTTGCAGGCGGGCGATCAACTACAAACGGCAAATGATCATATTTTGCGTAGC
GAAATTGGTATTGCACCGATTCCGCTTCGAGATGTTATTCGTGCTTTGCCATCTTCTGAATATCAGGCGTTTAAACGAAA
ATCCCAATATTATTGGTGGCGAAATGAATGGACGTTGCAAAGTAACAGTGATCGTATGGGTTATCGTTTTCAAGGTCAGA
CATTAGAATTAAAGCAGCCGTTGGAAATGCTATCTCACGCCATTCAGTTTGGTAGTGTGCAAGTTCCACCAAGTGGTCAG
CCTATTATTTTGATGGCTGATGCGCAAACCACAGGCGGTTATCCTAAAATCGCTAATGTGATTGATGTTGATCTTGGGGC
TTTGGCACAGGTACGTTTAGGTTCAACGATTAAATTTGAAGCGGTTAGCTTACAAGAGGCTGCTAAATTACGCCGTAAAA
ATGAAATATACCTTGATCAAATTAGGAGAATTGTTGATGAAAAAAATTGA

Upstream 100 bases:

>100_bases
TCGGTTATACTAAACAAGCACTTTTTGATAAAAATCAAGCACAACCAACCTTATTACAAGCTGGCGATACTGTGAAATTT
ATTGTGGATGGGATTGAACT

Downstream 100 bases:

>100_bases
TTTAAATGCAGATATTGCAGAGGGTTTTCCTTTTGATGAAAGTTTATTGCAGTTGCTTTCTTCTGCAAATATTGCTTGTG
GCTTACACGCTGGGGGCGCA

Product: exoribonuclease II

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MIDILDVKSRATIQDLGRFGLRRFGISHCGAMDKLALRAGNILLGNAENVPAIEVPLGGITLQFQQDMNFCVTGAFYEMM
LDDKPVFAYWRYQVRAGQILKMTRAKIGMYGYLCVQGGFVLPQALNSCSTDLRAEIGGIEGRCLQAGDQLQTANDHILRS
EIGIAPIPLRDVIRALPSSEYQAFKRKSQYYWWRNEWTLQSNSDRMGYRFQGQTLELKQPLEMLSHAIQFGSVQVPPSGQ
PIILMADAQTTGGYPKIANVIDVDLGALAQVRLGSTIKFEAVSLQEAAKLRRKNEIYLDQIRRIVDEKN

Sequences:

>Translated_309_residues
MIDILDVKSRATIQDLGRFGLRRFGISHCGAMDKLALRAGNILLGNAENVPAIEVPLGGITLQFQQDMNFCVTGAFYEMM
LDDKPVFAYWRYQVRAGQILKMTRAKIGMYGYLCVQGGFVLPQALNSCSTDLRAEIGGIEGRCLQAGDQLQTANDHILRS
EIGIAPIPLRDVIRALPSSEYQAFKRKSQYYWWRNEWTLQSNSDRMGYRFQGQTLELKQPLEMLSHAIQFGSVQVPPSGQ
PIILMADAQTTGGYPKIANVIDVDLGALAQVRLGSTIKFEAVSLQEAAKLRRKNEIYLDQIRRIVDEKN
>Mature_309_residues
MIDILDVKSRATIQDLGRFGLRRFGISHCGAMDKLALRAGNILLGNAENVPAIEVPLGGITLQFQQDMNFCVTGAFYEMM
LDDKPVFAYWRYQVRAGQILKMTRAKIGMYGYLCVQGGFVLPQALNSCSTDLRAEIGGIEGRCLQAGDQLQTANDHILRS
EIGIAPIPLRDVIRALPSSEYQAFKRKSQYYWWRNEWTLQSNSDRMGYRFQGQTLELKQPLEMLSHAIQFGSVQVPPSGQ
PIILMADAQTTGGYPKIANVIDVDLGALAQVRLGSTIKFEAVSLQEAAKLRRKNEIYLDQIRRIVDEKN

Specific function: Unknown

COG id: COG1984

COG function: function code E; Allophanate hydrolase subunit 2

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycsJ and yeast urea amidolyase (DUR1,2) [H]

Homologues:

Organism=Escherichia coli, GI1786930, Length=310, Percent_Identity=46.7741935483871, Blast_Score=276, Evalue=1e-75,
Organism=Saccharomyces cerevisiae, GI6319685, Length=323, Percent_Identity=25.6965944272446, Blast_Score=110, Evalue=4e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003778
- InterPro:   IPR002130 [H]

Pfam domain/function: PF02626 AHS2 [H]

EC number: NA

Molecular weight: Translated: 34622; Mature: 34622

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDILDVKSRATIQDLGRFGLRRFGISHCGAMDKLALRAGNILLGNAENVPAIEVPLGGI
CCEEEECCCCCHHHHHHHHHHHHHCHHHCCHHHHHHHHCCCEEEECCCCCCEEEECCCCE
TLQFQQDMNFCVTGAFYEMMLDDKPVFAYWRYQVRAGQILKMTRAKIGMYGYLCVQGGFV
EEEEECCCCEEEHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHCCEEEEEECCCEE
LPQALNSCSTDLRAEIGGIEGRCLQAGDQLQTANDHILRSEIGIAPIPLRDVIRALPSSE
HHHHHHHHCHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHCCCHH
YQAFKRKSQYYWWRNEWTLQSNSDRMGYRFQGQTLELKQPLEMLSHAIQFGSVQVPPSGQ
HHHHHHCCCEEEECCEEEEECCCCCCCEEECCCEECHHHHHHHHHHHHHHCCEECCCCCC
PIILMADAQTTGGYPKIANVIDVDLGALAQVRLGSTIKFEAVSLQEAAKLRRKNEIYLDQ
CEEEEECCCCCCCCCHHHHEEECCHHHHHHHHCCCEEEEEEECHHHHHHHHHCCCHHHHH
IRRIVDEKN
HHHHHCCCC
>Mature Secondary Structure
MIDILDVKSRATIQDLGRFGLRRFGISHCGAMDKLALRAGNILLGNAENVPAIEVPLGGI
CCEEEECCCCCHHHHHHHHHHHHHCHHHCCHHHHHHHHCCCEEEECCCCCCEEEECCCCE
TLQFQQDMNFCVTGAFYEMMLDDKPVFAYWRYQVRAGQILKMTRAKIGMYGYLCVQGGFV
EEEEECCCCEEEHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHCCEEEEEECCCEE
LPQALNSCSTDLRAEIGGIEGRCLQAGDQLQTANDHILRSEIGIAPIPLRDVIRALPSSE
HHHHHHHHCHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHCCCHH
YQAFKRKSQYYWWRNEWTLQSNSDRMGYRFQGQTLELKQPLEMLSHAIQFGSVQVPPSGQ
HHHHHHCCCEEEECCEEEEECCCCCCCEEECCCEECHHHHHHHHHHHHHHCCEECCCCCC
PIILMADAQTTGGYPKIANVIDVDLGALAQVRLGSTIKFEAVSLQEAAKLRRKNEIYLDQ
CEEEEECCCCCCCCCHHHHEEECCHHHHHHHHCCCEEEEEEECHHHHHHHHHCCCHHHHH
IRRIVDEKN
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]