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The map label for this gene is ycfH [C]

Identifier: 148825266

GI number: 148825266

Start: 138238

End: 139020

Strand: Direct

Name: ycfH [C]

Synonym: CGSHiEE_00720

Alternate gene names: 148825266

Gene position: 138238-139020 (Clockwise)

Preceding gene: 148825265

Following gene: 148825267

Centisome position: 7.62

GC content: 40.74

Gene sequence:

>783_bases
ATGTTCATTGTTGATTCCCACTGCCATTTAGATGCGTTGGATTATGAAAATTTACACAAAAATATTGCAGATGTGGTGGA
AAAAGCACGCGCGCGTGATGTGAAACATTTGCTTGCGATTGGTGTAACCTTAAGCCGTTTTGAGCAGGCTTATGACTCTT
TACGGGAATTTAATAATGTCTCGCTTGCTTGTGGTGTTCATCCCCTTGATTTTGAAGAGGAATCTTATGACGCAGAACGT
TTATTGCGTTTGGCGCAAGATCCGAAAGTGATTGCTATTGGCGAAATTGGATTAGATTATTATTACAGTGCGGACAATAA
AGCGGCGCAACAAGTGGTGTTTGGTAGCCAAATCGATATTGCAAACCAATTAGATAAGCCTGTGATTATTCATACACGTT
CTGCAGGCGATGACACCATTGCAATGTTACGCGAACAGCATGCTGAAAAGTGCGGTGGCGTTATTCATTGTTTTACGGAA
ACCATGGAATTTGCGAAAAAAGCGTTGGATTTAGGTTTTTACATTTCTTGTTCTGGCATTGTAACCTTTAAAAATGCCGA
AGCGATTCGTGAGGTTATTCGTTATGTACCAATGGAACGCTTATTGGTGGAAACAGATTCGCCTTATCTTGCGCCTGTGC
CTTACAGAGGAAAAGAAAATCAACCCGCTTATACGAGAGAAGTATGTGAATACGTGGCAACCTTAAAGGGCGTTTCTGCA
GAGGCGTTTGCTCAAATCACTACACAAAATTTCGAGCGTTTATTTAAAATTCGTGTAGAATAA

Upstream 100 bases:

>100_bases
TAGATGGCTTGATGCGATTAGTCACAGAAGTATTTGAAACGCAATAAATTAAAGATATATCGTCTATGGCGTTAAAGCCT
TAGGCATAAGGAAAATAATT

Downstream 100 bases:

>100_bases
ATGCACAGTTCTGATAAGGGAAAAGTATGCGAAAGTTTTTTAAATATTTCTTATTTATTGTTGTTTTTTATTCCACGGTT
TTATGTTTTCCGTAGTGAAT

Product: putative deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MFIVDSHCHLDALDYENLHKNIADVVEKARARDVKHLLAIGVTLSRFEQAYDSLREFNNVSLACGVHPLDFEEESYDAER
LLRLAQDPKVIAIGEIGLDYYYSADNKAAQQVVFGSQIDIANQLDKPVIIHTRSAGDDTIAMLREQHAEKCGGVIHCFTE
TMEFAKKALDLGFYISCSGIVTFKNAEAIREVIRYVPMERLLVETDSPYLAPVPYRGKENQPAYTREVCEYVATLKGVSA
EAFAQITTQNFERLFKIRVE

Sequences:

>Translated_260_residues
MFIVDSHCHLDALDYENLHKNIADVVEKARARDVKHLLAIGVTLSRFEQAYDSLREFNNVSLACGVHPLDFEEESYDAER
LLRLAQDPKVIAIGEIGLDYYYSADNKAAQQVVFGSQIDIANQLDKPVIIHTRSAGDDTIAMLREQHAEKCGGVIHCFTE
TMEFAKKALDLGFYISCSGIVTFKNAEAIREVIRYVPMERLLVETDSPYLAPVPYRGKENQPAYTREVCEYVATLKGVSA
EAFAQITTQNFERLFKIRVE
>Mature_260_residues
MFIVDSHCHLDALDYENLHKNIADVVEKARARDVKHLLAIGVTLSRFEQAYDSLREFNNVSLACGVHPLDFEEESYDAER
LLRLAQDPKVIAIGEIGLDYYYSADNKAAQQVVFGSQIDIANQLDKPVIIHTRSAGDDTIAMLREQHAEKCGGVIHCFTE
TMEFAKKALDLGFYISCSGIVTFKNAEAIREVIRYVPMERLLVETDSPYLAPVPYRGKENQPAYTREVCEYVATLKGVSA
EAFAQITTQNFERLFKIRVE

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=271, Percent_Identity=32.8413284132841, Blast_Score=120, Evalue=1e-27,
Organism=Homo sapiens, GI110349734, Length=271, Percent_Identity=32.8413284132841, Blast_Score=120, Evalue=1e-27,
Organism=Homo sapiens, GI226061853, Length=277, Percent_Identity=32.129963898917, Blast_Score=118, Evalue=5e-27,
Organism=Homo sapiens, GI226061614, Length=262, Percent_Identity=31.2977099236641, Blast_Score=112, Evalue=3e-25,
Organism=Homo sapiens, GI226061595, Length=230, Percent_Identity=31.304347826087, Blast_Score=95, Evalue=5e-20,
Organism=Homo sapiens, GI225903424, Length=219, Percent_Identity=27.8538812785388, Blast_Score=91, Evalue=9e-19,
Organism=Homo sapiens, GI14042943, Length=200, Percent_Identity=30.5, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI225903439, Length=155, Percent_Identity=32.9032258064516, Blast_Score=80, Evalue=2e-15,
Organism=Escherichia coli, GI1787342, Length=257, Percent_Identity=60.3112840466926, Blast_Score=320, Evalue=6e-89,
Organism=Escherichia coli, GI48994985, Length=251, Percent_Identity=32.6693227091633, Blast_Score=128, Evalue=3e-31,
Organism=Escherichia coli, GI87082439, Length=258, Percent_Identity=28.2945736434109, Blast_Score=112, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI17559024, Length=273, Percent_Identity=28.9377289377289, Blast_Score=128, Evalue=3e-30,
Organism=Caenorhabditis elegans, GI71980746, Length=265, Percent_Identity=29.811320754717, Blast_Score=115, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI17565396, Length=302, Percent_Identity=24.1721854304636, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17543026, Length=197, Percent_Identity=26.9035532994924, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24648690, Length=219, Percent_Identity=31.0502283105023, Blast_Score=94, Evalue=8e-20,
Organism=Drosophila melanogaster, GI24586117, Length=205, Percent_Identity=31.219512195122, Blast_Score=88, Evalue=5e-18,
Organism=Drosophila melanogaster, GI221330018, Length=271, Percent_Identity=28.4132841328413, Blast_Score=88, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 29373; Mature: 29373

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: PS01137 TATD_1 ; PS01090 TATD_2 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFIVDSHCHLDALDYENLHKNIADVVEKARARDVKHLLAIGVTLSRFEQAYDSLREFNNV
CEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SLACGVHPLDFEEESYDAERLLRLAQDPKVIAIGEIGLDYYYSADNKAAQQVVFGSQIDI
EEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCEEEECCCCHHHHHHHCCCCCCH
ANQLDKPVIIHTRSAGDDTIAMLREQHAEKCGGVIHCFTETMEFAKKALDLGFYISCSGI
HHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCE
VTFKNAEAIREVIRYVPMERLLVETDSPYLAPVPYRGKENQPAYTREVCEYVATLKGVSA
EEECCHHHHHHHHHHCCHHHHEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCH
EAFAQITTQNFERLFKIRVE
HHHHHHHHHHHHHHHHEECC
>Mature Secondary Structure
MFIVDSHCHLDALDYENLHKNIADVVEKARARDVKHLLAIGVTLSRFEQAYDSLREFNNV
CEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SLACGVHPLDFEEESYDAERLLRLAQDPKVIAIGEIGLDYYYSADNKAAQQVVFGSQIDI
EEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCEEEECCCCHHHHHHHCCCCCCH
ANQLDKPVIIHTRSAGDDTIAMLREQHAEKCGGVIHCFTETMEFAKKALDLGFYISCSGI
HHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCE
VTFKNAEAIREVIRYVPMERLLVETDSPYLAPVPYRGKENQPAYTREVCEYVATLKGVSA
EEECCHHHHHHHHHHCCHHHHEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCH
EAFAQITTQNFERLFKIRVE
HHHHHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]