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The map label for this gene is yfiY [H]

Identifier: 148824235

GI number: 148824235

Start: 3416846

End: 3417925

Strand: Direct

Name: yfiY [H]

Synonym: TBFG_13060

Alternate gene names: 148824235

Gene position: 3416846-3417925 (Clockwise)

Preceding gene: 148824226

Following gene: 148824236

Centisome position: 77.23

GC content: 67.41

Gene sequence:

>1080_bases
ATGCGATCCACTGTTGCTGTCGCCGTAGCGGCAGCCGTGATCGCAGCGTCCAGTGGTTGCGGCTCCGATCAACCGGCCCA
TAAGGCGTCACAATCGATGATCACGCCCACCACCCAGATCGCCGGCGCCGGGGTGCTGGGAAACGACAGAAAGCCGGATG
AGTCGTGCGCGCGTGCGGCGGCCGCGGCCGATCCGGGGCCACCGACCCGACCAGCGCACAATGCGGCGGGAGTCAGCCCG
GAGATGGTGCAGGTGCCGGCGGAGGCGCAGCGCATCGTGGTGCTCTCCGGTGACCAGCTCGACGCGCTGTGCGCGCTGGG
CCTGCAATCGCGGATCGTCGCCGCCGCGTTGCCGAACAGCTCCTCAAGTCAACCTTCCTATCTGGGCACGACCGTGCATG
ATCTGCCCGGTGTCGGTACTCGCAGCGCCCCCGACCTGCGCGCCATTGCGGCGGCTCACCCGGATCTGATCCTGGGTTCG
CAGGGTTTGACGCCGCAGTTGTATCCGCAGCTGGCGGCGATCGCCCCGACGGTGTTTACCGCGGCACCGGGCGCGGACTG
GGAAAATAACCTGCGTGGTGTCGGTGCCGCCACGGCCCGTATCGCCGCGGTGGACGCGCTGATCACCGGGTTCGCCGAAC
ACGCCACCCAGGTCGGGACCAAGCATGACGCGACCCACTTCCAAGCGTCGATCGTGCAGCTGACCGCCAACACCATGCGG
GTATACGGCGCCAACAACTTCCCGGCCAGCGTGCTGAGCGCGGTCGGCGTCGACCGACCGCCGTCTCAACGGTTCACCGA
CAAGGCCTACATCGAGATCGGCACCACGGCCGCCGACCTGGCGAAATCACCGGACTTCTCGGCGGCCGACGCCGATATCG
TCTACCTGTCGTGCGCGTCGGAAGCAGCCGCGGAACGCGCGGCCGTCATCCTGGATAGCGACCCATGGCGCAAGCTGTCC
GCCAACCGTGACAACCGGGTCTTCGTCGTCAACGACCAGGTATGGCAGACCGGCGAGGGTATGGTCGCTGCCCGCGGCAT
TGTCGATGATCTGCGCTGGGTCGACGCGCCGATCAACTAG

Upstream 100 bases:

>100_bases
ACTCCGCCGGCGGGCCGTTGCAGACCAACGCTTTCCGCCCGCGCGAATCGGGGTCGACGGCTGGCCGAGTGCTACCGTCG
AACGCGTGCTGTCCGGCGGG

Downstream 100 bases:

>100_bases
TGAGGCGCAGCGCTAGGCTTTGGGATACCCACAGCTAAAAAGTTAATCAAAGAAACGAAGAGGGTTGCCATGAGCACTGT
TGCCGCCTACGCCGCCATGT

Product: Fe(III)-dicitrate-binding periplasmic lipoprotein fecB

Products: ADP; phosphate; iron dicitrate [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 359; Mature: 359

Protein sequence:

>359_residues
MRSTVAVAVAAAVIAASSGCGSDQPAHKASQSMITPTTQIAGAGVLGNDRKPDESCARAAAAADPGPPTRPAHNAAGVSP
EMVQVPAEAQRIVVLSGDQLDALCALGLQSRIVAAALPNSSSSQPSYLGTTVHDLPGVGTRSAPDLRAIAAAHPDLILGS
QGLTPQLYPQLAAIAPTVFTAAPGADWENNLRGVGAATARIAAVDALITGFAEHATQVGTKHDATHFQASIVQLTANTMR
VYGANNFPASVLSAVGVDRPPSQRFTDKAYIEIGTTAADLAKSPDFSAADADIVYLSCASEAAAERAAVILDSDPWRKLS
ANRDNRVFVVNDQVWQTGEGMVAARGIVDDLRWVDAPIN

Sequences:

>Translated_359_residues
MRSTVAVAVAAAVIAASSGCGSDQPAHKASQSMITPTTQIAGAGVLGNDRKPDESCARAAAAADPGPPTRPAHNAAGVSP
EMVQVPAEAQRIVVLSGDQLDALCALGLQSRIVAAALPNSSSSQPSYLGTTVHDLPGVGTRSAPDLRAIAAAHPDLILGS
QGLTPQLYPQLAAIAPTVFTAAPGADWENNLRGVGAATARIAAVDALITGFAEHATQVGTKHDATHFQASIVQLTANTMR
VYGANNFPASVLSAVGVDRPPSQRFTDKAYIEIGTTAADLAKSPDFSAADADIVYLSCASEAAAERAAVILDSDPWRKLS
ANRDNRVFVVNDQVWQTGEGMVAARGIVDDLRWVDAPIN
>Mature_359_residues
MRSTVAVAVAAAVIAASSGCGSDQPAHKASQSMITPTTQIAGAGVLGNDRKPDESCARAAAAADPGPPTRPAHNAAGVSP
EMVQVPAEAQRIVVLSGDQLDALCALGLQSRIVAAALPNSSSSQPSYLGTTVHDLPGVGTRSAPDLRAIAAAHPDLILGS
QGLTPQLYPQLAAIAPTVFTAAPGADWENNLRGVGAATARIAAVDALITGFAEHATQVGTKHDATHFQASIVQLTANTMR
VYGANNFPASVLSAVGVDRPPSQRFTDKAYIEIGTTAADLAKSPDFSAADADIVYLSCASEAAAERAAVILDSDPWRKLS
ANRDNRVFVVNDQVWQTGEGMVAARGIVDDLRWVDAPIN

Specific function: Part of the ABC transporter complex yfiYZ/yfhA/yusV involved in import of the iron-hydroxamate siderophores schizokinen, arthrobactin and corprogen. Binds the siderophores and delivers them to the surface of yfiZ/yfhA (Probable) [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable). Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 36911; Mature: 36911

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSTVAVAVAAAVIAASSGCGSDQPAHKASQSMITPTTQIAGAGVLGNDRKPDESCARAA
CCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCHHHCCCCCCCCCCCCHHHHHHHH
AAADPGPPTRPAHNAAGVSPEMVQVPAEAQRIVVLSGDQLDALCALGLQSRIVAAALPNS
HCCCCCCCCCCCCCCCCCCHHHEECCCCCCEEEEEECCCHHHHHHHHHHHHEEEEECCCC
SSSQPSYLGTTVHDLPGVGTRSAPDLRAIAAAHPDLILGSQGLTPQLYPQLAAIAPTVFT
CCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHEE
AAPGADWENNLRGVGAATARIAAVDALITGFAEHATQVGTKHDATHFQASIVQLTANTMR
CCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHEEEECEEE
VYGANNFPASVLSAVGVDRPPSQRFTDKAYIEIGTTAADLAKSPDFSAADADIVYLSCAS
EEECCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHCCCCCCCCCCCEEEEECCC
EAAAERAAVILDSDPWRKLSANRDNRVFVVNDQVWQTGEGMVAARGIVDDLRWVDAPIN
HHHHCCEEEEECCCCCHHHCCCCCCEEEEEECCCEECCCCEEEEHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRSTVAVAVAAAVIAASSGCGSDQPAHKASQSMITPTTQIAGAGVLGNDRKPDESCARAA
CCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCHHHCCCCCCCCCCCCHHHHHHHH
AAADPGPPTRPAHNAAGVSPEMVQVPAEAQRIVVLSGDQLDALCALGLQSRIVAAALPNS
HCCCCCCCCCCCCCCCCCCHHHEECCCCCCEEEEEECCCHHHHHHHHHHHHEEEEECCCC
SSSQPSYLGTTVHDLPGVGTRSAPDLRAIAAAHPDLILGSQGLTPQLYPQLAAIAPTVFT
CCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHEE
AAPGADWENNLRGVGAATARIAAVDALITGFAEHATQVGTKHDATHFQASIVQLTANTMR
CCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHEEEECEEE
VYGANNFPASVLSAVGVDRPPSQRFTDKAYIEIGTTAADLAKSPDFSAADADIVYLSCAS
EEECCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHCCCCCCCCCCCEEEEECCC
EAAAERAAVILDSDPWRKLSANRDNRVFVVNDQVWQTGEGMVAARGIVDDLRWVDAPIN
HHHHCCEEEEECCCCCHHHCCCCCCEEEEEECCCEECCCCEEEEHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; iron dicitrate [Periplasm]; H2O [C]

Specific reaction: ATP + iron dicitrate [Periplasm] + H2O = ADP + phosphate + iron dicitrate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8946165; 9384377 [H]