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The map label for this gene is ybbM [H]

Identifier: 148824190

GI number: 148824190

Start: 3370321

End: 3370980

Strand: Direct

Name: ybbM [H]

Synonym: TBFG_13015

Alternate gene names: 148824190

Gene position: 3370321-3370980 (Clockwise)

Preceding gene: 148824189

Following gene: 148824194

Centisome position: 76.18

GC content: 66.21

Gene sequence:

>660_bases
ATGGCGGTGCATGGTTTCCTGCTCGAACGGGTCAGCGTGGTGCGCGACGAGGCGACGGTGCTGCGGCAGGTCAGCGCGCA
TTTTCCCGCTGGCCGCTGCAGTGCGGTGCGGGGCGCCAGTGGATCGGGAAAGACCACGCTGCTGCGGTTGCTGAACCGGC
TCATCGATCCGACGTCCGGAAAAGTCTGGCTTGACGGTGTGCCGCTCACCGATCTGGATGTGCTCGTGTTACGTCGGCGG
GTCGGCCTGGTTGCGCAGGCTCCCGTGGTGCTTACCGATGCGGTGCTCAATGAGGTTCGCGTCGGACGCCCGGACCTGCC
AGAAGGTCGAGTGACCGAGCTGCTGGCGCGGCTGTGTCTCGGCCAGTCCGCACGCGAAGCGTTCTTGCCGCACCAACGAT
CCGCCTTGCGCACTGCGCTGATACCCGCGATCGACTCCACGAAAGTCGTTGGGCTGATTAGCCTTCCGGGTGCGATGTCC
GGACTTATCCTGGCCGGGGTCGACCCGCTGACCGCGATCCGCTACCAAATCGTGGTGATGTACCTGCTGCTCGCCGCCAC
CGCGGTGGCAGCGCTGACCTGTGCACGCCTGGCTGAACGTGCCTTATTCGACCGCGCGCACCGGCTCGTTTCGCTGCCCG
CGGCGACTCGTCGGGCATGA

Upstream 100 bases:

>100_bases
CCCTGGCGCGGGCGCTGCGCCCGGCGATGGATGCCACCAACCTGCAGTCGTCATAATCCCGATGCAACCGCATAAGGGCT
GGTGTGGCTGATGCATCCTG

Downstream 100 bases:

>100_bases
GTTCGCGACTCGATCACAGCCAATCGCCGCTGTGGCATGTGGCCGTTGTCAGTCGTTATCCACGGTCTCCGTGCCCAGGA
AGCGAAAGCCCTGATCCAGG

Product: transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MAVHGFLLERVSVVRDEATVLRQVSAHFPAGRCSAVRGASGSGKTTLLRLLNRLIDPTSGKVWLDGVPLTDLDVLVLRRR
VGLVAQAPVVLTDAVLNEVRVGRPDLPEGRVTELLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMS
GLILAGVDPLTAIRYQIVVMYLLLAATAVAALTCARLAERALFDRAHRLVSLPAATRRA

Sequences:

>Translated_219_residues
MAVHGFLLERVSVVRDEATVLRQVSAHFPAGRCSAVRGASGSGKTTLLRLLNRLIDPTSGKVWLDGVPLTDLDVLVLRRR
VGLVAQAPVVLTDAVLNEVRVGRPDLPEGRVTELLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMS
GLILAGVDPLTAIRYQIVVMYLLLAATAVAALTCARLAERALFDRAHRLVSLPAATRRA
>Mature_218_residues
AVHGFLLERVSVVRDEATVLRQVSAHFPAGRCSAVRGASGSGKTTLLRLLNRLIDPTSGKVWLDGVPLTDLDVLVLRRRV
GLVAQAPVVLTDAVLNEVRVGRPDLPEGRVTELLARLCLGQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSG
LILAGVDPLTAIRYQIVVMYLLLAATAVAALTCARLAERALFDRAHRLVSLPAATRRA

Specific function: Unknown

COG id: COG0390

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0014 family [H]

Homologues:

Organism=Homo sapiens, GI171184400, Length=105, Percent_Identity=35.2380952380952, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI42741659, Length=92, Percent_Identity=34.7826086956522, Blast_Score=67, Evalue=9e-12,
Organism=Homo sapiens, GI21536378, Length=91, Percent_Identity=35.1648351648352, Blast_Score=67, Evalue=1e-11,
Organism=Escherichia coli, GI87081746, Length=98, Percent_Identity=42.8571428571429, Blast_Score=91, Evalue=4e-20,
Organism=Escherichia coli, GI1786654, Length=111, Percent_Identity=40.5405405405405, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1786698, Length=136, Percent_Identity=28.6764705882353, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1787143, Length=108, Percent_Identity=33.3333333333333, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1786803, Length=91, Percent_Identity=35.1648351648352, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788450, Length=178, Percent_Identity=29.7752808988764, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1786398, Length=111, Percent_Identity=39.6396396396396, Blast_Score=61, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI115533592, Length=96, Percent_Identity=42.7083333333333, Blast_Score=77, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI71996809, Length=96, Percent_Identity=39.5833333333333, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI193211015, Length=96, Percent_Identity=39.5833333333333, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI193211017, Length=96, Percent_Identity=39.5833333333333, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71992285, Length=94, Percent_Identity=37.2340425531915, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI193202349, Length=99, Percent_Identity=36.3636363636364, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI193208177, Length=87, Percent_Identity=41.3793103448276, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI212646699, Length=101, Percent_Identity=33.6633663366337, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17558664, Length=101, Percent_Identity=31.6831683168317, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI115535101, Length=105, Percent_Identity=38.0952380952381, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI193209708, Length=155, Percent_Identity=33.5483870967742, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI115534520, Length=82, Percent_Identity=40.2439024390244, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI25146777, Length=103, Percent_Identity=32.0388349514563, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17567265, Length=105, Percent_Identity=34.2857142857143, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17567269, Length=105, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71996550, Length=88, Percent_Identity=37.5, Blast_Score=64, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6323959, Length=98, Percent_Identity=33.6734693877551, Blast_Score=70, Evalue=4e-13,
Organism=Drosophila melanogaster, GI85726357, Length=193, Percent_Identity=28.4974093264249, Blast_Score=74, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24641565, Length=114, Percent_Identity=35.9649122807018, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24653245, Length=90, Percent_Identity=38.8888888888889, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI281363262, Length=90, Percent_Identity=38.8888888888889, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005226 [H]

Pfam domain/function: PF03649 UPF0014 [H]

EC number: NA

Molecular weight: Translated: 23400; Mature: 23269

Theoretical pI: Translated: 11.39; Mature: 11.39

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVHGFLLERVSVVRDEATVLRQVSAHFPAGRCSAVRGASGSGKTTLLRLLNRLIDPTSG
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHCCCCCC
KVWLDGVPLTDLDVLVLRRRVGLVAQAPVVLTDAVLNEVRVGRPDLPEGRVTELLARLCL
CEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC
GQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTAIRYQIVVM
CCHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHCCCCHHHHHHHHHHHH
YLLLAATAVAALTCARLAERALFDRAHRLVSLPAATRRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCC
>Mature Secondary Structure 
AVHGFLLERVSVVRDEATVLRQVSAHFPAGRCSAVRGASGSGKTTLLRLLNRLIDPTSG
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHCCCCCC
KVWLDGVPLTDLDVLVLRRRVGLVAQAPVVLTDAVLNEVRVGRPDLPEGRVTELLARLCL
CEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC
GQSAREAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTAIRYQIVVM
CCHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHCCCCHHHHHHHHHHHH
YLLLAATAVAALTCARLAERALFDRAHRLVSLPAATRRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]