| Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009524 |
| Length | 2,978,976 |
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The map label for this gene is thrB [H]
Identifier: 148654085
GI number: 148654085
Start: 2854850
End: 2856091
Strand: Direct
Name: thrB [H]
Synonym: PsycPRwf_2288
Alternate gene names: 148654085
Gene position: 2854850-2856091 (Clockwise)
Preceding gene: 148654084
Following gene: 148654086
Centisome position: 95.83
GC content: 45.89
Gene sequence:
>1242_bases ATGTCTGTTTATACTCATCTTTCAGAAGACCAATTTGCTGCTTTTTGCCAAGCTTTCGGCGTATCTTTTGCTAAAGCCAT TCCCATTACCCAAGGCATTAAAAACTCAAACTGGTTCATTCAGACCACAGAGGATGCAGACGGTGAATACTCTTATGTCT TTACCTTATTTGAGGAGCGTCCACCAGCTGATATCACCAAAATGGCCACCATTTTAAACCGCTTAAAAGGCACTTTGCCT GTCGCAGCACCTTTGGCCAAAAAAGCCCGAAAAGCTGATGGCTCAGCCGACTATCTGATTCAATACGAAAATAAAGCCAT TACCTTAGTGCCTTGCCTATCAGGTGGTCATCCGGACAAGACCACACCCAGCATGTGTTACAGCATGGGACAAGCACTAG CGACCTTACACAACACGCTACAAAGTCTCACACCAGCCGAAGATTACGGGGTACCGTTATACCCTTGGCATCAGGTGCGT GATCGTGAAATCAAATTTATGCCCGCTGATGAAGCACGGCTTATGCAAGACATCTGGCAAAGCTATGAATCGCTGCCTTT AGAGTCTTTGCCCAAAGGTTTGTGCCACTTAGATATGTTCGCTGATAACACCTTGTGGAACCTAACCTCTGGTAAAGAAG AGCTGACCGGATTACTTGACTTTACTGAAGTGAGTGTTGAGCATTATGTGATGGATATTGCCATTACGATCAACGACTTC TGTACGACTTGGGGCGTGGCCGGTGATGGCGAATCGGTGAATTTTGACACTCAAAAAATGCAGGCTTTTATTGAAGGCTA TCAAAGTGCTCGTCCGCTGAGCACCGCTGAGCAGCAAGCGCTGCCCATCATGTTGGCCATGGCAGCCGTTACCTTCTGGC TACTGCGCTTGAATGTCATATATTACAACCGTGAACAAGGTCGAACCGGCGATAATATCATGGTCAAAAACCCAGACCTG ATGAAACGCTTGGCCGCTTATCACTGGAATCAAGTTGAGAAATTACGAGCCCAGCAGCAAACAGTTTATGTATTGCAGCA TGCTTGTTTTGAGGCAGATAACCGTGACAAGGATGCTACTGGCTTTAAACTTATTGGTGTTTTTGCAGCTCAGCAGCAAG CCGAGGCGGCTATTGAACAGCTCAAAGACCAGCCTGGCTTTAAAGATTACCCCAATGGCTTTTTTATAGACACCTATCCT TTAGGTCAGATCAATTTCACCTCAGGATTCGATAAGCCATAA
Upstream 100 bases:
>100_bases TGAGAGTATAGGCTATAAATTAGCGATTATCTTTGAGCCTTTGTGCTGTATCTTTTAACTGGCTTTTACCCATTAACCCC TCATCGATTAAGAGAGCCTC
Downstream 100 bases:
>100_bases CTCACTACCCATAAGCTTGTAGCGACTAATACAGACCATAAATACAAACCATAAAAATATAAATGTATCGTCAGTGACTG GCTATTTAAGTTAACCGTGC
Product: homoserine kinase
Products: NA
Alternate protein names: HK; HSK [H]
Number of amino acids: Translated: 413; Mature: 412
Protein sequence:
>413_residues MSVYTHLSEDQFAAFCQAFGVSFAKAIPITQGIKNSNWFIQTTEDADGEYSYVFTLFEERPPADITKMATILNRLKGTLP VAAPLAKKARKADGSADYLIQYENKAITLVPCLSGGHPDKTTPSMCYSMGQALATLHNTLQSLTPAEDYGVPLYPWHQVR DREIKFMPADEARLMQDIWQSYESLPLESLPKGLCHLDMFADNTLWNLTSGKEELTGLLDFTEVSVEHYVMDIAITINDF CTTWGVAGDGESVNFDTQKMQAFIEGYQSARPLSTAEQQALPIMLAMAAVTFWLLRLNVIYYNREQGRTGDNIMVKNPDL MKRLAAYHWNQVEKLRAQQQTVYVLQHACFEADNRDKDATGFKLIGVFAAQQQAEAAIEQLKDQPGFKDYPNGFFIDTYP LGQINFTSGFDKP
Sequences:
>Translated_413_residues MSVYTHLSEDQFAAFCQAFGVSFAKAIPITQGIKNSNWFIQTTEDADGEYSYVFTLFEERPPADITKMATILNRLKGTLP VAAPLAKKARKADGSADYLIQYENKAITLVPCLSGGHPDKTTPSMCYSMGQALATLHNTLQSLTPAEDYGVPLYPWHQVR DREIKFMPADEARLMQDIWQSYESLPLESLPKGLCHLDMFADNTLWNLTSGKEELTGLLDFTEVSVEHYVMDIAITINDF CTTWGVAGDGESVNFDTQKMQAFIEGYQSARPLSTAEQQALPIMLAMAAVTFWLLRLNVIYYNREQGRTGDNIMVKNPDL MKRLAAYHWNQVEKLRAQQQTVYVLQHACFEADNRDKDATGFKLIGVFAAQQQAEAAIEQLKDQPGFKDYPNGFFIDTYP LGQINFTSGFDKP >Mature_412_residues SVYTHLSEDQFAAFCQAFGVSFAKAIPITQGIKNSNWFIQTTEDADGEYSYVFTLFEERPPADITKMATILNRLKGTLPV AAPLAKKARKADGSADYLIQYENKAITLVPCLSGGHPDKTTPSMCYSMGQALATLHNTLQSLTPAEDYGVPLYPWHQVRD REIKFMPADEARLMQDIWQSYESLPLESLPKGLCHLDMFADNTLWNLTSGKEELTGLLDFTEVSVEHYVMDIAITINDFC TTWGVAGDGESVNFDTQKMQAFIEGYQSARPLSTAEQQALPIMLAMAAVTFWLLRLNVIYYNREQGRTGDNIMVKNPDLM KRLAAYHWNQVEKLRAQQQTVYVLQHACFEADNRDKDATGFKLIGVFAAQQQAEAAIEQLKDQPGFKDYPNGFFIDTYPL GQINFTSGFDKP
Specific function: Unknown
COG id: COG2334
COG function: function code R; Putative homoserine kinase type II (protein kinase fold)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pseudomonas-type thrB family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002575 - InterPro: IPR005280 - InterPro: IPR011009 [H]
Pfam domain/function: PF01636 APH [H]
EC number: =2.7.1.39 [H]
Molecular weight: Translated: 46423; Mature: 46292
Theoretical pI: Translated: 4.72; Mature: 4.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVYTHLSEDQFAAFCQAFGVSFAKAIPITQGIKNSNWFIQTTEDADGEYSYVFTLFEER CCCCCCCCHHHHHHHHHHHCCHHHHHCCHHCCCCCCCEEEEECCCCCCCEEEEEEEECCC PPADITKMATILNRLKGTLPVAAPLAKKARKADGSADYLIQYENKAITLVPCLSGGHPDK CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEEECCCEEEEEEECCCCCCCC TTPSMCYSMGQALATLHNTLQSLTPAEDYGVPLYPWHQVRDREIKFMPADEARLMQDIWQ CCHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHCCCCEEEEECCHHHHHHHHHHH SYESLPLESLPKGLCHLDMFADNTLWNLTSGKEELTGLLDFTEVSVEHYVMDIAITINDF HHHCCCHHHHCCHHEEEHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHEEEEEEEEEHHH CTTWGVAGDGESVNFDTQKMQAFIEGYQSARPLSTAEQQALPIMLAMAAVTFWLLRLNVI HHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHE YYNREQGRTGDNIMVKNPDLMKRLAAYHWNQVEKLRAQQQTVYVLQHACFEADNRDKDAT EEECCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC GFKLIGVFAAQQQAEAAIEQLKDQPGFKDYPNGFFIDTYPLGQINFTSGFDKP CEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCEEEECCCCCCC >Mature Secondary Structure SVYTHLSEDQFAAFCQAFGVSFAKAIPITQGIKNSNWFIQTTEDADGEYSYVFTLFEER CCCCCCCHHHHHHHHHHHCCHHHHHCCHHCCCCCCCEEEEECCCCCCCEEEEEEEECCC PPADITKMATILNRLKGTLPVAAPLAKKARKADGSADYLIQYENKAITLVPCLSGGHPDK CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEEECCCEEEEEEECCCCCCCC TTPSMCYSMGQALATLHNTLQSLTPAEDYGVPLYPWHQVRDREIKFMPADEARLMQDIWQ CCHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHCCCCEEEEECCHHHHHHHHHHH SYESLPLESLPKGLCHLDMFADNTLWNLTSGKEELTGLLDFTEVSVEHYVMDIAITINDF HHHCCCHHHHCCHHEEEHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHEEEEEEEEEHHH CTTWGVAGDGESVNFDTQKMQAFIEGYQSARPLSTAEQQALPIMLAMAAVTFWLLRLNVI HHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHE YYNREQGRTGDNIMVKNPDLMKRLAAYHWNQVEKLRAQQQTVYVLQHACFEADNRDKDAT EEECCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC GFKLIGVFAAQQQAEAAIEQLKDQPGFKDYPNGFFIDTYPLGQINFTSGFDKP CEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA