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The map label for this gene is ybgJ [C]

Identifier: 148654021

GI number: 148654021

Start: 2765108

End: 2765803

Strand: Direct

Name: ybgJ [C]

Synonym: PsycPRwf_2224

Alternate gene names: 148654021

Gene position: 2765108-2765803 (Clockwise)

Preceding gene: 148654020

Following gene: 148654022

Centisome position: 92.82

GC content: 47.7

Gene sequence:

>696_bases
ATGCCAAACTTGATCAGTAATGCTGAACTCAACAGCCCTGACCAGCCCACTTGGCAATTATGTAGTGAGACCAATTTAAC
GCTACATTTTGCTAAGCCTATCACCCTACAAAAGCAGCAGCTTTGCTGGGCTTTGGCTGATCGTATTCGCAAGCTGCTGA
CGGTGACCGAAGTCGTCATTGGTATGAATACTTTGAGCGTTTTTACCCAGCCATTAACTTTTATTGAGCTAAATGAGCTA
AAACAACACCTAACACAGCTGATAAAACAAACAGAGGGTCAAAGCATTCAAGGCAAGCATATTCAGATACCTGTGCAATA
TGGCGGCGAATATGGCCCTGACCTAAAGCCGATGGCTCAGGCGTTAGGCTTGTCTGTAGAAGAGGTGGTAAAGCTACACA
GCGAGGCAATTTATACCGTTTACTTTATTGGATTTCAGCCAGGATTTCCTTACTTGGGCGGCTTATCAGAAAAGCTTTAT
TTCCCAAGGCGAGAGACACCGCGTACTCAGGTTCCAGCAGGCTCGGTCGGTATTGGCGGTGAACAAACGGGGGTATACCC
CTTCTCCTCCCCAGGCGGTTGGCAATTGCTGGGGCGTACTCAGATGCCGCTGTTTGATTTGACACAAAACCCGCCGACCG
CACTGAGTGCAGGAGATACTCTGCAGTTCACGGTGCTTGATATTCATTACTCGTAA

Upstream 100 bases:

>100_bases
GGCTTTCAAGAAGGTGAGGTTAGTATCCATTATTTAGAACAGTGGATTGAGCAAAATATTTAATTGACTCTATATTATCA
ACCCTTAAAGGACTTAAGGC

Downstream 100 bases:

>100_bases
ACAAGGGATAGGCCACTGATTATGAAGATTTTAGCCTCAAATGCCTTAGCCAGTTTTCAAGATTTGGGGCGCTTTGGCTT
TCGTAGCCTAGGCGTGGGCA

Product: allophanate hydrolase subunit 1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MPNLISNAELNSPDQPTWQLCSETNLTLHFAKPITLQKQQLCWALADRIRKLLTVTEVVIGMNTLSVFTQPLTFIELNEL
KQHLTQLIKQTEGQSIQGKHIQIPVQYGGEYGPDLKPMAQALGLSVEEVVKLHSEAIYTVYFIGFQPGFPYLGGLSEKLY
FPRRETPRTQVPAGSVGIGGEQTGVYPFSSPGGWQLLGRTQMPLFDLTQNPPTALSAGDTLQFTVLDIHYS

Sequences:

>Translated_231_residues
MPNLISNAELNSPDQPTWQLCSETNLTLHFAKPITLQKQQLCWALADRIRKLLTVTEVVIGMNTLSVFTQPLTFIELNEL
KQHLTQLIKQTEGQSIQGKHIQIPVQYGGEYGPDLKPMAQALGLSVEEVVKLHSEAIYTVYFIGFQPGFPYLGGLSEKLY
FPRRETPRTQVPAGSVGIGGEQTGVYPFSSPGGWQLLGRTQMPLFDLTQNPPTALSAGDTLQFTVLDIHYS
>Mature_230_residues
PNLISNAELNSPDQPTWQLCSETNLTLHFAKPITLQKQQLCWALADRIRKLLTVTEVVIGMNTLSVFTQPLTFIELNELK
QHLTQLIKQTEGQSIQGKHIQIPVQYGGEYGPDLKPMAQALGLSVEEVVKLHSEAIYTVYFIGFQPGFPYLGGLSEKLYF
PRRETPRTQVPAGSVGIGGEQTGVYPFSSPGGWQLLGRTQMPLFDLTQNPPTALSAGDTLQFTVLDIHYS

Specific function: Unknown

COG id: COG2049

COG function: function code E; Allophanate hydrolase subunit 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycsJ and yeast urea amidolyase (DUR1,2) [H]

Homologues:

Organism=Escherichia coli, GI1786929, Length=205, Percent_Identity=45.8536585365854, Blast_Score=188, Evalue=2e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003833
- InterPro:   IPR020899
- InterPro:   IPR010016
- InterPro:   IPR002130 [H]

Pfam domain/function: PF02682 AHS1 [H]

EC number: NA

Molecular weight: Translated: 25629; Mature: 25498

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNLISNAELNSPDQPTWQLCSETNLTLHFAKPITLQKQQLCWALADRIRKLLTVTEVVI
CCCCCCCCCCCCCCCHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
GMNTLSVFTQPLTFIELNELKQHLTQLIKQTEGQSIQGKHIQIPVQYGGEYGPDLKPMAQ
CCHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCHHHHHH
ALGLSVEEVVKLHSEAIYTVYFIGFQPGFPYLGGLSEKLYFPRRETPRTQVPAGSVGIGG
HHCCCHHHHHHHHHCEEEEEEEEEECCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCC
EQTGVYPFSSPGGWQLLGRTQMPLFDLTQNPPTALSAGDTLQFTVLDIHYS
CCCCEEECCCCCCEEEECCCCCCEEECCCCCCCCCCCCCEEEEEEEEEEEC
>Mature Secondary Structure 
PNLISNAELNSPDQPTWQLCSETNLTLHFAKPITLQKQQLCWALADRIRKLLTVTEVVI
CCCCCCCCCCCCCCHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
GMNTLSVFTQPLTFIELNELKQHLTQLIKQTEGQSIQGKHIQIPVQYGGEYGPDLKPMAQ
CCHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCHHHHHH
ALGLSVEEVVKLHSEAIYTVYFIGFQPGFPYLGGLSEKLYFPRRETPRTQVPAGSVGIGG
HHCCCHHHHHHHHHCEEEEEEEEEECCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCC
EQTGVYPFSSPGGWQLLGRTQMPLFDLTQNPPTALSAGDTLQFTVLDIHYS
CCCCEEECCCCCCEEEECCCCCCEEECCCCCCCCCCCCCEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]