Click here to switch to the map view.

The map label for this gene is yhgF [C]

Identifier: 148653919

GI number: 148653919

Start: 2645245

End: 2647794

Strand: Direct

Name: yhgF [C]

Synonym: PsycPRwf_2122

Alternate gene names: 148653919

Gene position: 2645245-2647794 (Clockwise)

Preceding gene: 148653917

Following gene: 148653921

Centisome position: 88.8

GC content: 48.51

Gene sequence:

>2550_bases
ATGCCAACCACATTTCTTAACTTCGATACGGATATGAACCAAACCGATACTACAACTGCCAACACCCCTACCAGCCAAAG
CAGCAGCAATTTGCCGGCTGATGTCATTGCCAACATCCATAATAAGCTTGCAAAAGAGCTGGGTATTAAGCCTGCGCAAG
TCGATGCGTTTGTTAAGCTTTACGACGAAGGTGCTACGGTGCCGTTCATCGCTCGTTATCGTAAAGAAAAAACACAAGGC
TTAGACGACAGCCAATTACGTGCTTTGGAAAAAGGTTTAAACTACGAGCGTGACATGGCCTCACGTCGTGCTAAGATTCT
TGAGCTACTGCAAAGCCAAGGTAACTTAACCGAAGCGCTGCAATCTCGAATTGAGCAGGCCACCTCTAAGCTTGAATTAG
AGGACATCTACCTGCCTTATCGCCCTCGCCGCCGCTCATTGGCTGCTAAAGCCCGTGCTGCAGGTCTGGATAAGGTTGCT
AAAACTCTACTCAATAATGAAGTCACGCCACTTGACGCCCTAAGCGATTACAGTCTGCCTGAGACTATCACTGATGATAC
CGGCGCTGAGATTGACGTTGATTTTTCAGATACCGAAAAACAATTAGCCGGCGTGGAAGCCATTATCATCGATGGCTGGA
CCCAAGAGCTTGAGCTACTTGATAACTTACGTAGCGGTTTTGCTAAAACTGCCACTATCAATTCAAGCCTAGCTTCTGAC
GAAAAACGTGAGGTGGGTGAGAAGTTCGCTGATTATTTTGAGCATAGCGAAAGCTTAGCACGCCTGCCCAATCATCGCCT
GCTTGCGATGCTACGTGGTCGTCAAGAAAATGTATTGGTGCTTAAAGTCGATGGTGAAGATGCTCCTTTTGTCGATAAAG
TTATCAATAAATTTGAGCTTGAAAATACCAAGCCTCAAGAGCGTCATGACTTTTTAATAACTGCTGCCAACAGCTTGTGG
AAGGATAAGTGGCGCCCGCATTTAGAGCACCGCTTATTGACCGAAAAACGTCTGGCCGCAGAAGCTGATGCTATTGATGT
CTTCGCCAGTAACTTACAGCACCTATTAATGGCCGCCCCTGCCGGCCGTAAAGTTATTTTAGGTGTGGATCCTGGTATTC
GTCATGGTGTAAAAATGGCGGTGATCGATGCCCAAGGTCAAGTCATGCAAGATGGCGAAGGTAAGCCGGCCATCGCGACA
GTCTATCCATTTGCCCCCGATAATAAAATGGATGAGGCTAAAGCAACTATTGCTCAGCTGTTAAAAGACCATCAGGTAGA
GCTTGTGGCAATCGGCAATGGTACGGCCAGCCGTGAAACCGATGCCATGATCAAAGAGCTGATTGAAGCCGATGAGACCA
TCACAGCCAAAGCCGTCGTGGTCAATGAATCAGGCGCTTCTGTGTATTCTGCCAGCGAGCTTGCCAGTGATGAGCTCGCT
GATTTAGACGTCTCTATCCGCGGTGCAGTGTCTATCGCCCGCCGTCTACAAGACCCCTTATCAGAGCTGGTTAAAGTTGA
GCCAAAAGCCATTGGCGTGGGTCAATATCAGCATGATGTGAACCAAGCTCAGCTGTCTGACAGCTTAGATAAAGTGACGC
AAGACTGTGTGAACGCAGTGGGTGTGGATGTCAATACCGCAAGCCCTGCTATCTTAGCCCACATTGCCGGTCTAAACCGT
AACGTCGCTCAGCAAATTGTCAACTACCGCAAAGAACATGGTGCATTTACTAACCGCGAGCAGCTAAAAGATGTGCCCAG
ACTTGGGGTAAAAACCTTTGAACAGGCAGCGGGTTTCCTACGCATTCGTGATGGCGAAGAGCCGCTGGATGCTACCGGTG
TGCATCCAGAGAGCTATGACTTGGTGAAAGCCCTATTAGACAAATCTGGCAAGTCAATTGCTGACGTACTGGGTAATGAC
AGCCTTATCAATACGCTAAGCACCGATGGTATTGACGCAGCCAACGATGACAACATCAGCATTGCCGCCATCAAACAAGA
GCTTGCTAAGCCTGCTCATGACCCTCGCCCTGAGTTCAAAACAGCTCAGTTTAGAGACGACGTAAACAGCGTAAGCGATC
TAGAAGAAGGCATGCAGCTTGAAGGCGTGGTTACCAATGTGACTGGTTTTGGCTGCTTCGTGGATGTTGGCGTACATCAA
GATGGCTTAGTGCATATCTCTGAGATGGCCAACGACTTTGTTGAAGACCCCATGAACTTGGTTAAACCCGGTGATATCGT
CAGCGTTCGTGTTATTTCAATTGATGCCAAACGCAATCGTATCGGCTTTAGCATGAAATCAGAAGATGCCGCTTCGGCCA
AACGTGCTACTAGCCCGCAGCGCAGTACTGACAAAAACGCTGAGAATGCTGCGACTAAGCCGGCCAAGGCGCGCAAAAAT
AGCCGTGCTAAACCTGCCAATAAAGCCGCTCGTACTGCCAATACCCGCAGTGATAAGCCAAAGCCTAGCAAATCTGCTAA
GCCCAAAGCTGAAGAGGCTAAAGTAGGCTCACTCGGTGCCTTGCTACAGCAAGCCGGGTTAAAAAAATAA

Upstream 100 bases:

>100_bases
ACATAGTAATGCTGTATGTGTTTGTTAATTTAAGCAGACAAAATCACATAAATAAACATTAATAAGCAAAACCATTTTTA
TTATCTCAGCTTTTGCTATA

Downstream 100 bases:

>100_bases
CCTAGCATTCATTGCTGCTTTGCAATCAATATCTAAATTGACTTCCTCCCCTCCCTAAAGTGAGGGGATTCCTACAGCTA
GACGGTCAAGCCCGACCGCA

Product: RNA-binding S1 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 849; Mature: 848

Protein sequence:

>849_residues
MPTTFLNFDTDMNQTDTTTANTPTSQSSSNLPADVIANIHNKLAKELGIKPAQVDAFVKLYDEGATVPFIARYRKEKTQG
LDDSQLRALEKGLNYERDMASRRAKILELLQSQGNLTEALQSRIEQATSKLELEDIYLPYRPRRRSLAAKARAAGLDKVA
KTLLNNEVTPLDALSDYSLPETITDDTGAEIDVDFSDTEKQLAGVEAIIIDGWTQELELLDNLRSGFAKTATINSSLASD
EKREVGEKFADYFEHSESLARLPNHRLLAMLRGRQENVLVLKVDGEDAPFVDKVINKFELENTKPQERHDFLITAANSLW
KDKWRPHLEHRLLTEKRLAAEADAIDVFASNLQHLLMAAPAGRKVILGVDPGIRHGVKMAVIDAQGQVMQDGEGKPAIAT
VYPFAPDNKMDEAKATIAQLLKDHQVELVAIGNGTASRETDAMIKELIEADETITAKAVVVNESGASVYSASELASDELA
DLDVSIRGAVSIARRLQDPLSELVKVEPKAIGVGQYQHDVNQAQLSDSLDKVTQDCVNAVGVDVNTASPAILAHIAGLNR
NVAQQIVNYRKEHGAFTNREQLKDVPRLGVKTFEQAAGFLRIRDGEEPLDATGVHPESYDLVKALLDKSGKSIADVLGND
SLINTLSTDGIDAANDDNISIAAIKQELAKPAHDPRPEFKTAQFRDDVNSVSDLEEGMQLEGVVTNVTGFGCFVDVGVHQ
DGLVHISEMANDFVEDPMNLVKPGDIVSVRVISIDAKRNRIGFSMKSEDAASAKRATSPQRSTDKNAENAATKPAKARKN
SRAKPANKAARTANTRSDKPKPSKSAKPKAEEAKVGSLGALLQQAGLKK

Sequences:

>Translated_849_residues
MPTTFLNFDTDMNQTDTTTANTPTSQSSSNLPADVIANIHNKLAKELGIKPAQVDAFVKLYDEGATVPFIARYRKEKTQG
LDDSQLRALEKGLNYERDMASRRAKILELLQSQGNLTEALQSRIEQATSKLELEDIYLPYRPRRRSLAAKARAAGLDKVA
KTLLNNEVTPLDALSDYSLPETITDDTGAEIDVDFSDTEKQLAGVEAIIIDGWTQELELLDNLRSGFAKTATINSSLASD
EKREVGEKFADYFEHSESLARLPNHRLLAMLRGRQENVLVLKVDGEDAPFVDKVINKFELENTKPQERHDFLITAANSLW
KDKWRPHLEHRLLTEKRLAAEADAIDVFASNLQHLLMAAPAGRKVILGVDPGIRHGVKMAVIDAQGQVMQDGEGKPAIAT
VYPFAPDNKMDEAKATIAQLLKDHQVELVAIGNGTASRETDAMIKELIEADETITAKAVVVNESGASVYSASELASDELA
DLDVSIRGAVSIARRLQDPLSELVKVEPKAIGVGQYQHDVNQAQLSDSLDKVTQDCVNAVGVDVNTASPAILAHIAGLNR
NVAQQIVNYRKEHGAFTNREQLKDVPRLGVKTFEQAAGFLRIRDGEEPLDATGVHPESYDLVKALLDKSGKSIADVLGND
SLINTLSTDGIDAANDDNISIAAIKQELAKPAHDPRPEFKTAQFRDDVNSVSDLEEGMQLEGVVTNVTGFGCFVDVGVHQ
DGLVHISEMANDFVEDPMNLVKPGDIVSVRVISIDAKRNRIGFSMKSEDAASAKRATSPQRSTDKNAENAATKPAKARKN
SRAKPANKAARTANTRSDKPKPSKSAKPKAEEAKVGSLGALLQQAGLKK
>Mature_848_residues
PTTFLNFDTDMNQTDTTTANTPTSQSSSNLPADVIANIHNKLAKELGIKPAQVDAFVKLYDEGATVPFIARYRKEKTQGL
DDSQLRALEKGLNYERDMASRRAKILELLQSQGNLTEALQSRIEQATSKLELEDIYLPYRPRRRSLAAKARAAGLDKVAK
TLLNNEVTPLDALSDYSLPETITDDTGAEIDVDFSDTEKQLAGVEAIIIDGWTQELELLDNLRSGFAKTATINSSLASDE
KREVGEKFADYFEHSESLARLPNHRLLAMLRGRQENVLVLKVDGEDAPFVDKVINKFELENTKPQERHDFLITAANSLWK
DKWRPHLEHRLLTEKRLAAEADAIDVFASNLQHLLMAAPAGRKVILGVDPGIRHGVKMAVIDAQGQVMQDGEGKPAIATV
YPFAPDNKMDEAKATIAQLLKDHQVELVAIGNGTASRETDAMIKELIEADETITAKAVVVNESGASVYSASELASDELAD
LDVSIRGAVSIARRLQDPLSELVKVEPKAIGVGQYQHDVNQAQLSDSLDKVTQDCVNAVGVDVNTASPAILAHIAGLNRN
VAQQIVNYRKEHGAFTNREQLKDVPRLGVKTFEQAAGFLRIRDGEEPLDATGVHPESYDLVKALLDKSGKSIADVLGNDS
LINTLSTDGIDAANDDNISIAAIKQELAKPAHDPRPEFKTAQFRDDVNSVSDLEEGMQLEGVVTNVTGFGCFVDVGVHQD
GLVHISEMANDFVEDPMNLVKPGDIVSVRVISIDAKRNRIGFSMKSEDAASAKRATSPQRSTDKNAENAATKPAKARKNS
RAKPANKAARTANTRSDKPKPSKSAKPKAEEAKVGSLGALLQQAGLKK

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=800, Percent_Identity=32.5, Blast_Score=359, Evalue=6e-99,
Organism=Homo sapiens, GI27597090, Length=350, Percent_Identity=24, Blast_Score=83, Evalue=1e-15,
Organism=Escherichia coli, GI87082262, Length=778, Percent_Identity=46.9151670951157, Blast_Score=645, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=89, Percent_Identity=41.5730337078652, Blast_Score=69, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17511129, Length=736, Percent_Identity=27.7173913043478, Blast_Score=224, Evalue=2e-58,
Organism=Drosophila melanogaster, GI62484314, Length=802, Percent_Identity=30.5486284289277, Blast_Score=358, Evalue=6e-99,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003583
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 92469; Mature: 92338

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTTFLNFDTDMNQTDTTTANTPTSQSSSNLPADVIANIHNKLAKELGIKPAQVDAFVKL
CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
YDEGATVPFIARYRKEKTQGLDDSQLRALEKGLNYERDMASRRAKILELLQSQGNLTEAL
HCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHH
QSRIEQATSKLELEDIYLPYRPRRRSLAAKARAAGLDKVAKTLLNNEVTPLDALSDYSLP
HHHHHHHHHHCCHHHEECCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHCCCCCC
ETITDDTGAEIDVDFSDTEKQLAGVEAIIIDGWTQELELLDNLRSGFAKTATINSSLASD
CCCCCCCCCEEEECCCHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCHHHHCCCHHHHCH
EKREVGEKFADYFEHSESLARLPNHRLLAMLRGRQENVLVLKVDGEDAPFVDKVINKFEL
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHC
ENTKPQERHDFLITAANSLWKDKWRPHLEHRLLTEKRLAAEADAIDVFASNLQHLLMAAP
CCCCCHHHHCEEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
AGRKVILGVDPGIRHGVKMAVIDAQGQVMQDGEGKPAIATVYPFAPDNKMDEAKATIAQL
CCCEEEEECCCCCCCCCEEEEEECCCCEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHH
LKDHQVELVAIGNGTASRETDAMIKELIEADETITAKAVVVNESGASVYSASELASDELA
HHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHCCHHHH
DLDVSIRGAVSIARRLQDPLSELVKVEPKAIGVGQYQHDVNQAQLSDSLDKVTQDCVNAV
HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GVDVNTASPAILAHIAGLNRNVAQQIVNYRKEHGAFTNREQLKDVPRLGVKTFEQAAGFL
CCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCEE
RIRDGEEPLDATGVHPESYDLVKALLDKSGKSIADVLGNDSLINTLSTDGIDAANDDNIS
EEECCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCHHHHHHCCCCCCCCCCCCEE
IAAIKQELAKPAHDPRPEFKTAQFRDDVNSVSDLEEGMQLEGVVTNVTGFGCFVDVGVHQ
HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEECEEEECCCCCEEEEEECCCC
DGLVHISEMANDFVEDPMNLVKPGDIVSVRVISIDAKRNRIGFSMKSEDAASAKRATSPQ
CCCEEHHHHHHHHHHCCHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCC
RSTDKNAENAATKPAKARKNSRAKPANKAARTANTRSDKPKPSKSAKPKAEEAKVGSLGA
CCCCCCCHHHCCCCHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
LLQQAGLKK
HHHHCCCCC
>Mature Secondary Structure 
PTTFLNFDTDMNQTDTTTANTPTSQSSSNLPADVIANIHNKLAKELGIKPAQVDAFVKL
CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
YDEGATVPFIARYRKEKTQGLDDSQLRALEKGLNYERDMASRRAKILELLQSQGNLTEAL
HCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHH
QSRIEQATSKLELEDIYLPYRPRRRSLAAKARAAGLDKVAKTLLNNEVTPLDALSDYSLP
HHHHHHHHHHCCHHHEECCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHCCCCCC
ETITDDTGAEIDVDFSDTEKQLAGVEAIIIDGWTQELELLDNLRSGFAKTATINSSLASD
CCCCCCCCCEEEECCCHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCHHHHCCCHHHHCH
EKREVGEKFADYFEHSESLARLPNHRLLAMLRGRQENVLVLKVDGEDAPFVDKVINKFEL
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHC
ENTKPQERHDFLITAANSLWKDKWRPHLEHRLLTEKRLAAEADAIDVFASNLQHLLMAAP
CCCCCHHHHCEEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
AGRKVILGVDPGIRHGVKMAVIDAQGQVMQDGEGKPAIATVYPFAPDNKMDEAKATIAQL
CCCEEEEECCCCCCCCCEEEEEECCCCEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHH
LKDHQVELVAIGNGTASRETDAMIKELIEADETITAKAVVVNESGASVYSASELASDELA
HHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHCCHHHH
DLDVSIRGAVSIARRLQDPLSELVKVEPKAIGVGQYQHDVNQAQLSDSLDKVTQDCVNAV
HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GVDVNTASPAILAHIAGLNRNVAQQIVNYRKEHGAFTNREQLKDVPRLGVKTFEQAAGFL
CCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCEE
RIRDGEEPLDATGVHPESYDLVKALLDKSGKSIADVLGNDSLINTLSTDGIDAANDDNIS
EEECCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCHHHHHHCCCCCCCCCCCCEE
IAAIKQELAKPAHDPRPEFKTAQFRDDVNSVSDLEEGMQLEGVVTNVTGFGCFVDVGVHQ
HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEECEEEECCCCCEEEEEECCCC
DGLVHISEMANDFVEDPMNLVKPGDIVSVRVISIDAKRNRIGFSMKSEDAASAKRATSPQ
CCCEEHHHHHHHHHHCCHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCC
RSTDKNAENAATKPAKARKNSRAKPANKAARTANTRSDKPKPSKSAKPKAEEAKVGSLGA
CCCCCCCHHHCCCCHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
LLQQAGLKK
HHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]