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The map label for this gene is ybeY [C]

Identifier: 148653768

GI number: 148653768

Start: 2456327

End: 2456884

Strand: Direct

Name: ybeY [C]

Synonym: PsycPRwf_1971

Alternate gene names: 148653768

Gene position: 2456327-2456884 (Clockwise)

Preceding gene: 148653767

Following gene: 148653769

Centisome position: 82.46

GC content: 46.95

Gene sequence:

>558_bases
ATGACCTCTGCCGCCATCCCTTTAATTGATATCAGCGCCTCTGAGCTTGTAGATACGCAGATAATTGAGCAGTTCTACAC
GCCACAGCTATTACAAAAGGTGCTGACCACTACGCTTGACTTTATGCAGGCGCAATCTGACGTAGTCTTGCCGTATTTTA
GTGAGGTTGAGCCCAGTGTTTGGCAACATAAGCCCAAACAGCTTGGAGTATATATCACCGATGCAGTAGAAGGTCGTGCG
CTTAATTTAGAGGCGCGTGATAAAGATTATGCGACCAATATATTGTCGTATCCCAGTGAGCTGCCGGCATTTATTATTGA
GCAAATGCCTGAGCTGGCTTTAGGTGAGCTGATCGTTTGTCATGACGTGGTTAAGCAGCAAGCCGCTGAGCAGCACAAAA
CGGTGGCAGAGCATGTGACCCATTTATTGGTCCATGGGATTTTGCATCTACTCGGCTTTGATCATGAGCTCGGGCAAGCA
CAGCAAGATGAAATGGAAGGCTTTGAAATTGCGATTCTAGAGCAGCTTGGGATTGGTAATCCTTATCTCGCCAGATAG

Upstream 100 bases:

>100_bases
ATCCAGCTTTTTTATTTGTCCGCATTACTTAGCTGTTTTACCACTGTCGATTGATACCTTTAAACAGCCTTACGACACCC
TATTTTTTGTGAGCTTTATT

Downstream 100 bases:

>100_bases
AGTGCTGACAGATAAGCGTTACAAAGCTGAAACTCTTTGTTTCAAATCGTAGCTTATCTGCTAATATATAGGTTTAGATT
TTATTACTACTGAGCCTGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 184

Protein sequence:

>185_residues
MTSAAIPLIDISASELVDTQIIEQFYTPQLLQKVLTTTLDFMQAQSDVVLPYFSEVEPSVWQHKPKQLGVYITDAVEGRA
LNLEARDKDYATNILSYPSELPAFIIEQMPELALGELIVCHDVVKQQAAEQHKTVAEHVTHLLVHGILHLLGFDHELGQA
QQDEMEGFEIAILEQLGIGNPYLAR

Sequences:

>Translated_185_residues
MTSAAIPLIDISASELVDTQIIEQFYTPQLLQKVLTTTLDFMQAQSDVVLPYFSEVEPSVWQHKPKQLGVYITDAVEGRA
LNLEARDKDYATNILSYPSELPAFIIEQMPELALGELIVCHDVVKQQAAEQHKTVAEHVTHLLVHGILHLLGFDHELGQA
QQDEMEGFEIAILEQLGIGNPYLAR
>Mature_184_residues
TSAAIPLIDISASELVDTQIIEQFYTPQLLQKVLTTTLDFMQAQSDVVLPYFSEVEPSVWQHKPKQLGVYITDAVEGRAL
NLEARDKDYATNILSYPSELPAFIIEQMPELALGELIVCHDVVKQQAAEQHKTVAEHVTHLLVHGILHLLGFDHELGQAQ
QDEMEGFEIAILEQLGIGNPYLAR

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

Organism=Escherichia coli, GI1786880, Length=144, Percent_Identity=36.8055555555556, Blast_Score=85, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 20688; Mature: 20557

Theoretical pI: Translated: 4.27; Mature: 4.27

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSAAIPLIDISASELVDTQIIEQFYTPQLLQKVLTTTLDFMQAQSDVVLPYFSEVEPSV
CCCCCCEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEECCCHHHCCHHH
WQHKPKQLGVYITDAVEGRALNLEARDKDYATNILSYPSELPAFIIEQMPELALGELIVC
HHCCHHHCCEEEECCCCCCEECCCCCCHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHH
HDVVKQQAAEQHKTVAEHVTHLLVHGILHLLGFDHELGQAQQDEMEGFEIAILEQLGIGN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHCCHHHHHHHHHCCCC
PYLAR
CCCCC
>Mature Secondary Structure 
TSAAIPLIDISASELVDTQIIEQFYTPQLLQKVLTTTLDFMQAQSDVVLPYFSEVEPSV
CCCCCEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEECCCHHHCCHHH
WQHKPKQLGVYITDAVEGRALNLEARDKDYATNILSYPSELPAFIIEQMPELALGELIVC
HHCCHHHCCEEEECCCCCCEECCCCCCHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHH
HDVVKQQAAEQHKTVAEHVTHLLVHGILHLLGFDHELGQAQQDEMEGFEIAILEQLGIGN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHCCHHHHHHHHHCCCC
PYLAR
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA