| Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009524 |
| Length | 2,978,976 |
Click here to switch to the map view.
The map label for this gene is hflX [H]
Identifier: 148653665
GI number: 148653665
Start: 2324245
End: 2325690
Strand: Direct
Name: hflX [H]
Synonym: PsycPRwf_1868
Alternate gene names: 148653665
Gene position: 2324245-2325690 (Clockwise)
Preceding gene: 148653662
Following gene: 148653666
Centisome position: 78.02
GC content: 47.58
Gene sequence:
>1446_bases TTGGATTATTTTGGTAGACATGAAGGTGGCGAACGCGCCATCTTAGTACACTTAGAGGTTAGACAAATCGCAGACCCAGA TGATTTAGAGGAATTTAAATTATTGGTAGACTCTGCAGGTGCGCAGCAATTGGCGGTCATCACAGGGTCAAGACAGAAGC CGGATGCCAAGTATTTTATTGGTAGTGGTAAAGCACAAGAGATTGCCGAGCAGGTACAGGCGCTTGAGGCAGATATTGTT ATTTTTAACCACAGTTTGACGCCTTCACAAGAGCGTAACTTAGAGACCTTGCTGCAATGCCGCGTCTTAGATCGTACTGG TCTAATTTTGGATATTTTCGCTCAGCGTGCCCGTACTTATGAAGGTAAATTGCAGGTGGAATTGGCTCAGCTTAACCACT TGGCGACCCGCCTAGTACGCGGCTGGACCCATTTGGAGCGTCAAAAAGGGGGGATTGGTCTACGCGGACCAGGTGAAACC CAGCTTGAAACCGATAGACGCTTGCTACAAATTCGAGTGTCTCAGTTAAAAGCACGCCTCGATAAAGTCAAACAGACCCG AGCACAAGGCCGAGCCAAGCGTCAAAAATCAGATGTATTGACCATCTCATTGGTGGGCTATACCAACGCCGGCAAGTCCT CTTTATTTAACCGCTTGGTCGATGAGGATATTTATGCTGCTGACCAGCTTTTTGCGACCTTAGATCCTACTTTAAGACGT ATGGACTGGCAAGGCGTGGGCCGAGTGGTCTTGGTCGATACGGTAGGTTTCGTGCGTCATTTACCGCACGAGTTGGTAGA GTCATTCCATGCAACTTTGGAGGAGACGCTAGAGGCTGACTTGTTATTACATGTGATTGACTCTTCAAGCCCCGACATGC ATGAGCAAATCAAAGCAGTAAAAGAGGTATTGAGCGAAATTGATAACCATGTGCCTGTGCTCAATGTCTACAACAAGATT GATATCACTGGTGAGCCGGCACAAATTAACTATAGTGGTCCTGGCGTGCCCAGTCGTGTGTATGTCTCCGCTAAGGCTGA CCTTGGCATGAGTATGCTGCACACTGCCGTACAGCAGTTATTGACCGGTAAACTCAACACGTTTGAGATCACCCTACCCT TCAATGCCGGCAATCTAAAAAATGAGCTATACCGCTTGGATGTGGTCGAACAAGAAAGCTATGATGAGCAGGGCCATGAA GTACTTACCCTACGTCTGCCCTCTGATAAGTTGCAGCAATTGTTGGGTCAAGCCAATATTGATCCTCTCTCAGTGCTGCC TAAAGACCAAGCTGAGCTGCTGATACCTACTCTTGAGCCTTTTGAAAAACAGCTAAAAGCCGATCAAGAAGCCAAAGCCG CCCTACTGGATTTAGAGGCAGACTTTGAGGCGCCTGATTTTGAGCCAGTAGCAGATTGGCCTGAAGACGATGATATTCTG CGCTAA
Upstream 100 bases:
>100_bases CTTGAACAAACAGCTCAGCATAAACAAACAACCGAGCTTTTCGTTACAATAACCATTTTGGTAACAAGACCATTTAAATT GACAACACAGGTGAATATTT
Downstream 100 bases:
>100_bases GCTTTTTATTTTATCTTGACCGAGTGATGATGACATCCAACATAGGAGCCTTTAGGCTCCTATTTTTTTGTCAAAAATTC AATTAATCTGGCTAACAATA
Product: HSR1-like GTP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 481; Mature: 481
Protein sequence:
>481_residues MDYFGRHEGGERAILVHLEVRQIADPDDLEEFKLLVDSAGAQQLAVITGSRQKPDAKYFIGSGKAQEIAEQVQALEADIV IFNHSLTPSQERNLETLLQCRVLDRTGLILDIFAQRARTYEGKLQVELAQLNHLATRLVRGWTHLERQKGGIGLRGPGET QLETDRRLLQIRVSQLKARLDKVKQTRAQGRAKRQKSDVLTISLVGYTNAGKSSLFNRLVDEDIYAADQLFATLDPTLRR MDWQGVGRVVLVDTVGFVRHLPHELVESFHATLEETLEADLLLHVIDSSSPDMHEQIKAVKEVLSEIDNHVPVLNVYNKI DITGEPAQINYSGPGVPSRVYVSAKADLGMSMLHTAVQQLLTGKLNTFEITLPFNAGNLKNELYRLDVVEQESYDEQGHE VLTLRLPSDKLQQLLGQANIDPLSVLPKDQAELLIPTLEPFEKQLKADQEAKAALLDLEADFEAPDFEPVADWPEDDDIL R
Sequences:
>Translated_481_residues MDYFGRHEGGERAILVHLEVRQIADPDDLEEFKLLVDSAGAQQLAVITGSRQKPDAKYFIGSGKAQEIAEQVQALEADIV IFNHSLTPSQERNLETLLQCRVLDRTGLILDIFAQRARTYEGKLQVELAQLNHLATRLVRGWTHLERQKGGIGLRGPGET QLETDRRLLQIRVSQLKARLDKVKQTRAQGRAKRQKSDVLTISLVGYTNAGKSSLFNRLVDEDIYAADQLFATLDPTLRR MDWQGVGRVVLVDTVGFVRHLPHELVESFHATLEETLEADLLLHVIDSSSPDMHEQIKAVKEVLSEIDNHVPVLNVYNKI DITGEPAQINYSGPGVPSRVYVSAKADLGMSMLHTAVQQLLTGKLNTFEITLPFNAGNLKNELYRLDVVEQESYDEQGHE VLTLRLPSDKLQQLLGQANIDPLSVLPKDQAELLIPTLEPFEKQLKADQEAKAALLDLEADFEAPDFEPVADWPEDDDIL R >Mature_481_residues MDYFGRHEGGERAILVHLEVRQIADPDDLEEFKLLVDSAGAQQLAVITGSRQKPDAKYFIGSGKAQEIAEQVQALEADIV IFNHSLTPSQERNLETLLQCRVLDRTGLILDIFAQRARTYEGKLQVELAQLNHLATRLVRGWTHLERQKGGIGLRGPGET QLETDRRLLQIRVSQLKARLDKVKQTRAQGRAKRQKSDVLTISLVGYTNAGKSSLFNRLVDEDIYAADQLFATLDPTLRR MDWQGVGRVVLVDTVGFVRHLPHELVESFHATLEETLEADLLLHVIDSSSPDMHEQIKAVKEVLSEIDNHVPVLNVYNKI DITGEPAQINYSGPGVPSRVYVSAKADLGMSMLHTAVQQLLTGKLNTFEITLPFNAGNLKNELYRLDVVEQESYDEQGHE VLTLRLPSDKLQQLLGQANIDPLSVLPKDQAELLIPTLEPFEKQLKADQEAKAALLDLEADFEAPDFEPVADWPEDDDIL R
Specific function: Unknown
COG id: COG2262
COG function: function code R; GTPases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]
Homologues:
Organism=Homo sapiens, GI310133116, Length=239, Percent_Identity=36.4016736401674, Blast_Score=120, Evalue=3e-27, Organism=Homo sapiens, GI310133118, Length=242, Percent_Identity=35.9504132231405, Blast_Score=120, Evalue=3e-27, Organism=Homo sapiens, GI310124269, Length=221, Percent_Identity=37.10407239819, Blast_Score=118, Evalue=1e-26, Organism=Homo sapiens, GI310124267, Length=221, Percent_Identity=37.10407239819, Blast_Score=118, Evalue=1e-26, Organism=Homo sapiens, GI310124171, Length=221, Percent_Identity=37.10407239819, Blast_Score=118, Evalue=1e-26, Organism=Homo sapiens, GI310124169, Length=221, Percent_Identity=37.10407239819, Blast_Score=118, Evalue=1e-26, Organism=Escherichia coli, GI1790615, Length=417, Percent_Identity=57.7937649880096, Blast_Score=471, Evalue=1e-134, Organism=Caenorhabditis elegans, GI17561038, Length=245, Percent_Identity=32.2448979591837, Blast_Score=103, Evalue=2e-22, Organism=Drosophila melanogaster, GI24650079, Length=400, Percent_Identity=30.25, Blast_Score=127, Evalue=1e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009022 - InterPro: IPR016496 - InterPro: IPR006073 - InterPro: IPR002917 [H]
Pfam domain/function: PF01926 MMR_HSR1 [H]
EC number: NA
Molecular weight: Translated: 53915; Mature: 53915
Theoretical pI: Translated: 4.77; Mature: 4.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDYFGRHEGGERAILVHLEVRQIADPDDLEEFKLLVDSAGAQQLAVITGSRQKPDAKYFI CCCCCCCCCCCEEEEEEEEHHHCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEE GSGKAQEIAEQVQALEADIVIFNHSLTPSQERNLETLLQCRVLDRTGLILDIFAQRARTY CCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCC EGKLQVELAQLNHLATRLVRGWTHLERQKGGIGLRGPGETQLETDRRLLQIRVSQLKARL CCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH DKVKQTRAQGRAKRQKSDVLTISLVGYTNAGKSSLFNRLVDEDIYAADQLFATLDPTLRR HHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHH MDWQGVGRVVLVDTVGFVRHLPHELVESFHATLEETLEADLLLHVIDSSSPDMHEQIKAV CCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH KEVLSEIDNHVPVLNVYNKIDITGEPAQINYSGPGVPSRVYVSAKADLGMSMLHTAVQQL HHHHHHHHCCCCEEEECCEEEECCCCCEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHH LTGKLNTFEITLPFNAGNLKNELYRLDVVEQESYDEQGHEVLTLRLPSDKLQQLLGQANI HCCCCCEEEEEEECCCCCHHHHHEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHCCCCC DPLSVLPKDQAELLIPTLEPFEKQLKADQEAKAALLDLEADFEAPDFEPVADWPEDDDIL CCCCCCCCCCCCEECCCHHHHHHHHCCCHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCC R C >Mature Secondary Structure MDYFGRHEGGERAILVHLEVRQIADPDDLEEFKLLVDSAGAQQLAVITGSRQKPDAKYFI CCCCCCCCCCCEEEEEEEEHHHCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEE GSGKAQEIAEQVQALEADIVIFNHSLTPSQERNLETLLQCRVLDRTGLILDIFAQRARTY CCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCC EGKLQVELAQLNHLATRLVRGWTHLERQKGGIGLRGPGETQLETDRRLLQIRVSQLKARL CCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH DKVKQTRAQGRAKRQKSDVLTISLVGYTNAGKSSLFNRLVDEDIYAADQLFATLDPTLRR HHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHH MDWQGVGRVVLVDTVGFVRHLPHELVESFHATLEETLEADLLLHVIDSSSPDMHEQIKAV CCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH KEVLSEIDNHVPVLNVYNKIDITGEPAQINYSGPGVPSRVYVSAKADLGMSMLHTAVQQL HHHHHHHHCCCCEEEECCEEEECCCCCEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHH LTGKLNTFEITLPFNAGNLKNELYRLDVVEQESYDEQGHEVLTLRLPSDKLQQLLGQANI HCCCCCEEEEEEECCCCCHHHHHEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHCCCCC DPLSVLPKDQAELLIPTLEPFEKQLKADQEAKAALLDLEADFEAPDFEPVADWPEDDDIL CCCCCCCCCCCCEECCCHHHHHHHHCCCHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCC R C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8248183; 7610040; 9278503; 2020545; 3040675 [H]