Click here to switch to the map view.

The map label for this gene is tolB [H]

Identifier: 148653367

GI number: 148653367

Start: 1925907

End: 1927256

Strand: Direct

Name: tolB [H]

Synonym: PsycPRwf_1569

Alternate gene names: 148653367

Gene position: 1925907-1927256 (Clockwise)

Preceding gene: 148653366

Following gene: 148653371

Centisome position: 64.65

GC content: 48.74

Gene sequence:

>1350_bases
ATGACTTTGACACCCTTGCAACAACAGCCTAACCTTTTTGGTCATACCGCCGCTCGCCGCAGCTTTGCGGCAATGACTAC
CACACTGCTGATATCCTTACTTGGTGCCAGTGCTGCTTTGATGAGCGTGAGTGCTCAGGCAGCTGAAGAAGAGTATGATC
TTGAGGCCACCATTACCAAAAAAGGGGAGACCAATCAAAACCAGGTGGCTTTTGTCCCCTTTGCTGGTGACAGTACTGTC
TCAAGCTTGATTGAAAACAACTTACAAGCCACTCCTTTAAAGATTACCAGCCAAGGCTTAATCGGTCAGCCACACAGCCG
TGATGATCTGGCTGTCACCTTGCCAGCTTGGCAGCAACTGGGCATTCCTTATCTGGTTATTGGCAGCAGCAAGCAACAAG
GCGGCAATACCAGCATTACCTTTGAAGTCATTGAGGTGGCCCAAGGCCGCATTATTAAAGGCACTCAAATGGTTCAGGGT
GTCGATAAAAAAGCGGCTGCCAATAAGGCGGCAGGTCGGATCTATGAGCTGCTAACCGGTAAACAAATCGACTTAAACGC
TCGACTGGTCTATGTTGAAGAAAAAGGCAGTGGCAAATCAAAAACCTCATCGCTGATATTAAGTGATGCCGATGGCAGTA
ACAAACGCCTATTGGCACAAGTGATTGATGCGGCTATCTATAGCCCAGCCATCTCTCCTGACGGCCGCTTTGTGGCTTAC
TCAGTACAGTTAAAAGACAACAGTGCCAACTTGTGGAAGCAGGACTTACAAACTCGCCAATTAACCCGCTTGGTCGACAT
GAAAGGCAGTAATCTTAGCCCTAGCTTCTCACCAGATGGCAGCAAGATTTTATTCTCAAGCACAGTCAATGGTGACTCTG
ATATCTACCGAGTCAGTAGCCAAGGCGGTAAAGCAGAACAAATCATCAGTCTGCCTTATGATCAGCTAAGTCCAAGCTAC
GCTTCAAATGGCAGCTTTGTGTTCGTCTCCGATCATGCCAGCCCCAATCGCCCCAATATTTATCGCTACAGCTTCTCAGG
GTCACCGGTACAAATATCACGCGGTGGATATGCTGCAAACCCAAGCATAAGCCCTGAAGGTACAAAAATTGGCTATCTAA
GTGGTCGTAGTGCCGCCATTATGAGCAGTAATGGCTCAAATGTTGCCAACTACGGTGCCACTGGCATCGATGCTGCCCCT
AAGTTCTCACCCACCGGTGAGCGTGTGGTATATTCACAAGGTACCAAAAACAGCAATCTGGTTATTCGCTACGTCGATGG
CGGTAAGACCATAACGCTACCCACAGAAGGTGTCGCCAAATTCCCAGTTTGGGTGCCCAGCGCCCAGTAA

Upstream 100 bases:

>100_bases
CCTAGCAAGCAGCGCTAGTTACACGGCTGCCCTTTACATCCCAATCACGTCTTAATATGCTTTATTTCATTAAAATAACA
AAGATAGGACTTGTGTACTC

Downstream 100 bases:

>100_bases
TCTGATGGGTGTGCGTCGTTACGCTATAACCCACAAAAAACAAGCATAAAAATACCCCATAAGTTGTGTCCAACTTATGG
GGTTCAGTTCAATATACCAA

Product: WD40 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 449; Mature: 448

Protein sequence:

>449_residues
MTLTPLQQQPNLFGHTAARRSFAAMTTTLLISLLGASAALMSVSAQAAEEEYDLEATITKKGETNQNQVAFVPFAGDSTV
SSLIENNLQATPLKITSQGLIGQPHSRDDLAVTLPAWQQLGIPYLVIGSSKQQGGNTSITFEVIEVAQGRIIKGTQMVQG
VDKKAAANKAAGRIYELLTGKQIDLNARLVYVEEKGSGKSKTSSLILSDADGSNKRLLAQVIDAAIYSPAISPDGRFVAY
SVQLKDNSANLWKQDLQTRQLTRLVDMKGSNLSPSFSPDGSKILFSSTVNGDSDIYRVSSQGGKAEQIISLPYDQLSPSY
ASNGSFVFVSDHASPNRPNIYRYSFSGSPVQISRGGYAANPSISPEGTKIGYLSGRSAAIMSSNGSNVANYGATGIDAAP
KFSPTGERVVYSQGTKNSNLVIRYVDGGKTITLPTEGVAKFPVWVPSAQ

Sequences:

>Translated_449_residues
MTLTPLQQQPNLFGHTAARRSFAAMTTTLLISLLGASAALMSVSAQAAEEEYDLEATITKKGETNQNQVAFVPFAGDSTV
SSLIENNLQATPLKITSQGLIGQPHSRDDLAVTLPAWQQLGIPYLVIGSSKQQGGNTSITFEVIEVAQGRIIKGTQMVQG
VDKKAAANKAAGRIYELLTGKQIDLNARLVYVEEKGSGKSKTSSLILSDADGSNKRLLAQVIDAAIYSPAISPDGRFVAY
SVQLKDNSANLWKQDLQTRQLTRLVDMKGSNLSPSFSPDGSKILFSSTVNGDSDIYRVSSQGGKAEQIISLPYDQLSPSY
ASNGSFVFVSDHASPNRPNIYRYSFSGSPVQISRGGYAANPSISPEGTKIGYLSGRSAAIMSSNGSNVANYGATGIDAAP
KFSPTGERVVYSQGTKNSNLVIRYVDGGKTITLPTEGVAKFPVWVPSAQ
>Mature_448_residues
TLTPLQQQPNLFGHTAARRSFAAMTTTLLISLLGASAALMSVSAQAAEEEYDLEATITKKGETNQNQVAFVPFAGDSTVS
SLIENNLQATPLKITSQGLIGQPHSRDDLAVTLPAWQQLGIPYLVIGSSKQQGGNTSITFEVIEVAQGRIIKGTQMVQGV
DKKAAANKAAGRIYELLTGKQIDLNARLVYVEEKGSGKSKTSSLILSDADGSNKRLLAQVIDAAIYSPAISPDGRFVAYS
VQLKDNSANLWKQDLQTRQLTRLVDMKGSNLSPSFSPDGSKILFSSTVNGDSDIYRVSSQGGKAEQIISLPYDQLSPSYA
SNGSFVFVSDHASPNRPNIYRYSFSGSPVQISRGGYAANPSISPEGTKIGYLSGRSAAIMSSNGSNVANYGATGIDAAPK
FSPTGERVVYSQGTKNSNLVIRYVDGGKTITLPTEGVAKFPVWVPSAQ

Specific function: Involved in the tonB-independent uptake of proteins [H]

COG id: COG0823

COG function: function code U; Periplasmic component of the Tol biopolymer transport system

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tolB family [H]

Homologues:

Organism=Escherichia coli, GI1786961, Length=355, Percent_Identity=27.887323943662, Blast_Score=97, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011659
- InterPro:   IPR014167
- InterPro:   IPR007195
- InterPro:   IPR015943 [H]

Pfam domain/function: PF07676 PD40; PF04052 TolB_N [H]

EC number: NA

Molecular weight: Translated: 47718; Mature: 47587

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLTPLQQQPNLFGHTAARRSFAAMTTTLLISLLGASAALMSVSAQAAEEEYDLEATITK
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEEEE
KGETNQNQVAFVPFAGDSTVSSLIENNLQATPLKITSQGLIGQPHSRDDLAVTLPAWQQL
CCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCEEEECCCHHHC
GIPYLVIGSSKQQGGNTSITFEVIEVAQGRIIKGTQMVQGVDKKAAANKAAGRIYELLTG
CCCEEEEECCCCCCCCCEEEEEEEEECCCEEEECHHHHHCCCHHHHHHHHHHHHHHHHCC
KQIDLNARLVYVEEKGSGKSKTSSLILSDADGSNKRLLAQVIDAAIYSPAISPDGRFVAY
CEEECCEEEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEE
SVQLKDNSANLWKQDLQTRQLTRLVDMKGSNLSPSFSPDGSKILFSSTVNGDSDIYRVSS
EEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEC
QGGKAEQIISLPYDQLSPSYASNGSFVFVSDHASPNRPNIYRYSFSGSPVQISRGGYAAN
CCCCCEEEEECCHHHCCCCCCCCCCEEEEECCCCCCCCCEEEEECCCCCEEEECCCEECC
PSISPEGTKIGYLSGRSAAIMSSNGSNVANYGATGIDAAPKFSPTGERVVYSQGTKNSNL
CCCCCCCCEEEEECCCCEEEEECCCCCCHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCE
VIRYVDGGKTITLPTEGVAKFPVWVPSAQ
EEEEECCCCEEEECCCCCCCCEEECCCCC
>Mature Secondary Structure 
TLTPLQQQPNLFGHTAARRSFAAMTTTLLISLLGASAALMSVSAQAAEEEYDLEATITK
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEEEE
KGETNQNQVAFVPFAGDSTVSSLIENNLQATPLKITSQGLIGQPHSRDDLAVTLPAWQQL
CCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCEEEECCCHHHC
GIPYLVIGSSKQQGGNTSITFEVIEVAQGRIIKGTQMVQGVDKKAAANKAAGRIYELLTG
CCCEEEEECCCCCCCCCEEEEEEEEECCCEEEECHHHHHCCCHHHHHHHHHHHHHHHHCC
KQIDLNARLVYVEEKGSGKSKTSSLILSDADGSNKRLLAQVIDAAIYSPAISPDGRFVAY
CEEECCEEEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEE
SVQLKDNSANLWKQDLQTRQLTRLVDMKGSNLSPSFSPDGSKILFSSTVNGDSDIYRVSS
EEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEC
QGGKAEQIISLPYDQLSPSYASNGSFVFVSDHASPNRPNIYRYSFSGSPVQISRGGYAAN
CCCCCEEEEECCHHHCCCCCCCCCCEEEEECCCCCCCCCEEEEECCCCCEEEECCCEECC
PSISPEGTKIGYLSGRSAAIMSSNGSNVANYGATGIDAAPKFSPTGERVVYSQGTKNSNL
CCCCCCCCEEEEECCCCEEEEECCCCCCHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCE
VIRYVDGGKTITLPTEGVAKFPVWVPSAQ
EEEEECCCCEEEECCCCCCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA