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The map label for this gene is nirD [H]

Identifier: 148653351

GI number: 148653351

Start: 1904985

End: 1905362

Strand: Direct

Name: nirD [H]

Synonym: PsycPRwf_1553

Alternate gene names: 148653351

Gene position: 1904985-1905362 (Clockwise)

Preceding gene: 148653350

Following gene: 148653356

Centisome position: 63.95

GC content: 43.92

Gene sequence:

>378_bases
ATGACCATTCAACTTATCTGTACTTTGAACGATATTATCCCTGAAGGCGGCGTTTGTGCGCTCATAGAGGGCAAACAAGT
GGCTATTTTTCGCACCAAGGACAATCAATTATTTGCCATTGACAATCTTGACCCTTTTAGTAATGCCAATGTCCTCTCTC
GTGGTCTGATTGGAGGTACTGTTGTCAAGACTGAGCTTGAAGATGGTAGCGTGTCAGAAGACGAGGTCATCTATATCGCC
TCACCCATCTATAAGCAACGATTTGATTTGGCCACGGGACAATGCTTAGATGATGAAACCGTAAAATTAGACTCATACCA
AGTCAGCCTTGATGGCGATCAGGTTATGGTCAGTCTAAAAAATGCCATGGCGGCCTAA

Upstream 100 bases:

>100_bases
TTAATCATCCTAATTACACCCAAGCCACTATTTTTTATCCAGCTTTTATCCAGCTTTTTATGCAACTGTTACGCTCACCC
GACTAAAAAAGGACGTCATT

Downstream 100 bases:

>100_bases
TTTTGTCCAAAACATGACCATTTAATCTAACAAAAAAGGATAAAAGACAGGCTTTTATCCTTTTTTATTTTAGGGCGGTT
ATGATAAAAACCCTATGACT

Product: nitrite reductase (NAD(P)H) small subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 124

Protein sequence:

>125_residues
MTIQLICTLNDIIPEGGVCALIEGKQVAIFRTKDNQLFAIDNLDPFSNANVLSRGLIGGTVVKTELEDGSVSEDEVIYIA
SPIYKQRFDLATGQCLDDETVKLDSYQVSLDGDQVMVSLKNAMAA

Sequences:

>Translated_125_residues
MTIQLICTLNDIIPEGGVCALIEGKQVAIFRTKDNQLFAIDNLDPFSNANVLSRGLIGGTVVKTELEDGSVSEDEVIYIA
SPIYKQRFDLATGQCLDDETVKLDSYQVSLDGDQVMVSLKNAMAA
>Mature_124_residues
TIQLICTLNDIIPEGGVCALIEGKQVAIFRTKDNQLFAIDNLDPFSNANVLSRGLIGGTVVKTELEDGSVSEDEVIYIAS
PIYKQRFDLATGQCLDDETVKLDSYQVSLDGDQVMVSLKNAMAA

Specific function: Required for activity of the reductase [H]

COG id: COG2146

COG function: function code PR; Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis nasE [H]

Homologues:

Organism=Escherichia coli, GI1789766, Length=106, Percent_Identity=42.4528301886792, Blast_Score=91, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012748
- InterPro:   IPR017881
- InterPro:   IPR017941 [H]

Pfam domain/function: NA

EC number: =1.7.1.4 [H]

Molecular weight: Translated: 13559; Mature: 13427

Theoretical pI: Translated: 3.96; Mature: 3.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIQLICTLNDIIPEGGVCALIEGKQVAIFRTKDNQLFAIDNLDPFSNANVLSRGLIGGT
CEEEEEEEECHHCCCCCEEEEEECCEEEEEEECCCEEEEECCCCCCCCCCHHHCCCCCCE
VVKTELEDGSVSEDEVIYIASPIYKQRFDLATGQCLDDETVKLDSYQVSLDGDQVMVSLK
EEEEECCCCCCCCCCEEEEECCCHHHHCCCCCCCCCCCCEEEEEEEEEEECCCEEEEEEC
NAMAA
HHHCC
>Mature Secondary Structure 
TIQLICTLNDIIPEGGVCALIEGKQVAIFRTKDNQLFAIDNLDPFSNANVLSRGLIGGT
EEEEEEEECHHCCCCCEEEEEECCEEEEEEECCCEEEEECCCCCCCCCCHHHCCCCCCE
VVKTELEDGSVSEDEVIYIASPIYKQRFDLATGQCLDDETVKLDSYQVSLDGDQVMVSLK
EEEEECCCCCCCCCCEEEEECCCHHHHCCCCCCCCCCCCEEEEEEEEEEECCCEEEEEEC
NAMAA
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]