| Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009524 |
| Length | 2,978,976 |
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The map label for this gene is dppD [H]
Identifier: 148653327
GI number: 148653327
Start: 1869761
End: 1870870
Strand: Direct
Name: dppD [H]
Synonym: PsycPRwf_1529
Alternate gene names: 148653327
Gene position: 1869761-1870870 (Clockwise)
Preceding gene: 148653326
Following gene: 148653328
Centisome position: 62.77
GC content: 49.01
Gene sequence:
>1110_bases ATGACAACTTTAAATTCTAATCCTGCCGCCTCAACGCTTAGCTCTGATCACCTTGTGAACACCCAAAATGAGGCCACTGG CCAACACGCTGCACCGCTGCTTTTGGATATTGAAAACTTATCTGTCACCTTCGGTAAAGGCGCGCGCGCTTTTCGTGCCG TTGATGATGTATCACTGCAGTTAAGACAAGGTGAAGTATTGGCCGTCGTCGGTGAATCTGGCTCTGGTAAATCAGTAACC ATGATGGCTTTAATGGGCTTATTGCCTTCAAGCGCCACTGTGGCTGCCAACAAAATGGACTTCGATGGCCAGCACATGCT GAGCTTATCAGGACGTGAGCGGCGCAAAATTATTGGTAAAGACATCTCCATGATTTTCCAAAATGCCATGTCTTGCCTAA ACCCCAGCTTCACGGTTGAATATCAATTGGCAGAAGTATTAAAAACCCATTTAGGCCTCAAAGGTGACGCTGCCCGTCAG CGTATTTTAGAGCTGTTAGAGTTGGTTGAAATTCCTGATGCCAAAAACAGACTATCGGTATATCCGCACCAATTATCAGG CGGTATGAGTCAGCGCATAATGATTGCTATGGCACTGGCTTGTGAGCCTAAGCTATTGATCGCCGATGAGCCCACTACCG CACTAGATGTGACCGTACAGGCGCAAATCATGGACCTGCTCGCCCGACTACAACGTGAAAAGCAGATGGCTATGGTGTTA ATCACTCATGACCTAGGACTGGTGGCACAAAATGCCCGCGACGTGGCGGTTATGTATGCCGGTCAAATGGTAGAGACCAA CAGGGTACCTGAGATATTTGAACAACCCTCACACCCTTATACTGAGGCGCTTTTACAAGCCATTCCTGAGCTTGCCATAG GCCAAGAGCGTTTAAACAGCTTACCGGGTGTGGTACCCAGTCAATATGACCGTCCCAAAGGCTGTTTACTCTCACCGCGC TGCCCTTATAAGCAAGACAAGTGTGATGTGCCGCCGCCTATCCTACCGACCCCCAATGGTCTGGTTCGATGCATACAGAC GGATTTTCCAGCCCGTACCTCTACCCGTTTTTCAAACCCCTCTTCTGAATCAATGGGGAGCGCACTATGA
Upstream 100 bases:
>100_bases TTTGGCCCGGTTTGGCTATTTTCTTAGCCGCTTTATCTATTAACTTAACCGGAGATGGGCTACGTGATGCTCTTGATCCT AAACTAAAGCAGGTGAGCTA
Downstream 100 bases:
>100_bases TGACTGATACAACGATGACTGATGCAACTTCCACCGCTACTACGGCAAGCTTGAATGCCCAAGCCAAAGTAGTGCTGAAA GCCGACAACCTGCACAAGCA
Product: oligopeptide/dipeptide ABC transporter ATPase
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 369; Mature: 368
Protein sequence:
>369_residues MTTLNSNPAASTLSSDHLVNTQNEATGQHAAPLLLDIENLSVTFGKGARAFRAVDDVSLQLRQGEVLAVVGESGSGKSVT MMALMGLLPSSATVAANKMDFDGQHMLSLSGRERRKIIGKDISMIFQNAMSCLNPSFTVEYQLAEVLKTHLGLKGDAARQ RILELLELVEIPDAKNRLSVYPHQLSGGMSQRIMIAMALACEPKLLIADEPTTALDVTVQAQIMDLLARLQREKQMAMVL ITHDLGLVAQNARDVAVMYAGQMVETNRVPEIFEQPSHPYTEALLQAIPELAIGQERLNSLPGVVPSQYDRPKGCLLSPR CPYKQDKCDVPPPILPTPNGLVRCIQTDFPARTSTRFSNPSSESMGSAL
Sequences:
>Translated_369_residues MTTLNSNPAASTLSSDHLVNTQNEATGQHAAPLLLDIENLSVTFGKGARAFRAVDDVSLQLRQGEVLAVVGESGSGKSVT MMALMGLLPSSATVAANKMDFDGQHMLSLSGRERRKIIGKDISMIFQNAMSCLNPSFTVEYQLAEVLKTHLGLKGDAARQ RILELLELVEIPDAKNRLSVYPHQLSGGMSQRIMIAMALACEPKLLIADEPTTALDVTVQAQIMDLLARLQREKQMAMVL ITHDLGLVAQNARDVAVMYAGQMVETNRVPEIFEQPSHPYTEALLQAIPELAIGQERLNSLPGVVPSQYDRPKGCLLSPR CPYKQDKCDVPPPILPTPNGLVRCIQTDFPARTSTRFSNPSSESMGSAL >Mature_368_residues TTLNSNPAASTLSSDHLVNTQNEATGQHAAPLLLDIENLSVTFGKGARAFRAVDDVSLQLRQGEVLAVVGESGSGKSVTM MALMGLLPSSATVAANKMDFDGQHMLSLSGRERRKIIGKDISMIFQNAMSCLNPSFTVEYQLAEVLKTHLGLKGDAARQR ILELLELVEIPDAKNRLSVYPHQLSGGMSQRIMIAMALACEPKLLIADEPTTALDVTVQAQIMDLLARLQREKQMAMVLI THDLGLVAQNARDVAVMYAGQMVETNRVPEIFEQPSHPYTEALLQAIPELAIGQERLNSLPGVVPSQYDRPKGCLLSPRC PYKQDKCDVPPPILPTPNGLVRCIQTDFPARTSTRFSNPSSESMGSAL
Specific function: Part of the binding-protein-dependent transport system for dipeptides. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI116734710, Length=236, Percent_Identity=29.2372881355932, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI21536376, Length=239, Percent_Identity=26.7782426778243, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI105990541, Length=231, Percent_Identity=24.6753246753247, Blast_Score=69, Evalue=9e-12, Organism=Homo sapiens, GI153792144, Length=214, Percent_Identity=24.2990654205607, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI1789963, Length=302, Percent_Identity=57.9470198675497, Blast_Score=370, Evalue=1e-104, Organism=Escherichia coli, GI48994883, Length=330, Percent_Identity=45.4545454545455, Blast_Score=280, Evalue=1e-76, Organism=Escherichia coli, GI1787548, Length=319, Percent_Identity=43.8871473354232, Blast_Score=267, Evalue=7e-73, Organism=Escherichia coli, GI1787759, Length=312, Percent_Identity=40.7051282051282, Blast_Score=245, Evalue=3e-66, Organism=Escherichia coli, GI145693107, Length=333, Percent_Identity=44.7447447447448, Blast_Score=243, Evalue=1e-65, Organism=Escherichia coli, GI1788506, Length=257, Percent_Identity=52.1400778210117, Blast_Score=240, Evalue=1e-64, Organism=Escherichia coli, GI1787500, Length=331, Percent_Identity=38.0664652567976, Blast_Score=204, Evalue=1e-53, Organism=Escherichia coli, GI1789962, Length=302, Percent_Identity=37.7483443708609, Blast_Score=176, Evalue=3e-45, Organism=Escherichia coli, GI1787758, Length=308, Percent_Identity=35.7142857142857, Blast_Score=168, Evalue=4e-43, Organism=Escherichia coli, GI1789890, Length=234, Percent_Identity=42.3076923076923, Blast_Score=163, Evalue=2e-41, Organism=Escherichia coli, GI48994997, Length=255, Percent_Identity=34.1176470588235, Blast_Score=142, Evalue=3e-35, Organism=Escherichia coli, GI1789891, Length=243, Percent_Identity=39.917695473251, Blast_Score=140, Evalue=2e-34, Organism=Escherichia coli, GI1786398, Length=274, Percent_Identity=35.4014598540146, Blast_Score=137, Evalue=1e-33, Organism=Escherichia coli, GI1787547, Length=259, Percent_Identity=32.8185328185328, Blast_Score=130, Evalue=2e-31, Organism=Escherichia coli, GI1789032, Length=276, Percent_Identity=31.5217391304348, Blast_Score=117, Evalue=1e-27, Organism=Escherichia coli, GI87081791, Length=269, Percent_Identity=33.8289962825279, Blast_Score=113, Evalue=2e-26, Organism=Escherichia coli, GI1787089, Length=239, Percent_Identity=35.5648535564854, Blast_Score=109, Evalue=3e-25, Organism=Escherichia coli, GI1788225, Length=258, Percent_Identity=30.6201550387597, Blast_Score=104, Evalue=7e-24, Organism=Escherichia coli, GI1788761, Length=246, Percent_Identity=29.2682926829268, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI87081834, Length=225, Percent_Identity=35.1111111111111, Blast_Score=102, Evalue=6e-23, Organism=Escherichia coli, GI1786703, Length=222, Percent_Identity=33.3333333333333, Blast_Score=101, Evalue=9e-23, Organism=Escherichia coli, GI1788450, Length=254, Percent_Identity=29.5275590551181, Blast_Score=99, Evalue=6e-22, Organism=Escherichia coli, GI1787712, Length=254, Percent_Identity=28.740157480315, Blast_Score=95, Evalue=7e-21, Organism=Escherichia coli, GI1790162, Length=260, Percent_Identity=28.0769230769231, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1787105, Length=224, Percent_Identity=31.6964285714286, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1787029, Length=258, Percent_Identity=28.6821705426357, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI87081709, Length=252, Percent_Identity=25.3968253968254, Blast_Score=93, Evalue=3e-20, Organism=Escherichia coli, GI1789672, Length=266, Percent_Identity=28.1954887218045, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1788644, Length=261, Percent_Identity=30.2681992337165, Blast_Score=91, Evalue=2e-19, Organism=Escherichia coli, GI1786872, Length=260, Percent_Identity=30.7692307692308, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1787370, Length=234, Percent_Identity=29.0598290598291, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1788165, Length=226, Percent_Identity=29.2035398230088, Blast_Score=88, Evalue=9e-19, Organism=Escherichia coli, GI1790467, Length=247, Percent_Identity=26.3157894736842, Blast_Score=88, Evalue=1e-18, Organism=Escherichia coli, GI1786563, Length=244, Percent_Identity=31.9672131147541, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI48994943, Length=283, Percent_Identity=25.7950530035336, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI1789873, Length=231, Percent_Identity=28.5714285714286, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI1786803, Length=241, Percent_Identity=26.5560165975104, Blast_Score=83, Evalue=3e-17, Organism=Escherichia coli, GI1786319, Length=241, Percent_Identity=29.8755186721992, Blast_Score=81, Evalue=1e-16, Organism=Escherichia coli, GI87082267, Length=272, Percent_Identity=26.1029411764706, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1789991, Length=240, Percent_Identity=29.5833333333333, Blast_Score=79, Evalue=6e-16, Organism=Escherichia coli, GI1786345, Length=221, Percent_Identity=28.5067873303167, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1787164, Length=211, Percent_Identity=30.8056872037915, Blast_Score=77, Evalue=3e-15, Organism=Escherichia coli, GI1790739, Length=236, Percent_Identity=29.6610169491525, Blast_Score=72, Evalue=8e-14, Organism=Escherichia coli, GI1789586, Length=214, Percent_Identity=29.4392523364486, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1790544, Length=262, Percent_Identity=27.0992366412214, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1787792, Length=244, Percent_Identity=29.5081967213115, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI48995001, Length=254, Percent_Identity=27.5590551181102, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1787112, Length=234, Percent_Identity=28.6324786324786, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1789593, Length=203, Percent_Identity=28.0788177339901, Blast_Score=68, Evalue=8e-13, Organism=Escherichia coli, GI87081782, Length=262, Percent_Identity=25.5725190839695, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1790190, Length=224, Percent_Identity=26.7857142857143, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1786253, Length=216, Percent_Identity=26.3888888888889, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1788053, Length=197, Percent_Identity=28.4263959390863, Blast_Score=63, Evalue=3e-11, Organism=Escherichia coli, GI1790525, Length=261, Percent_Identity=23.3716475095785, Blast_Score=62, Evalue=7e-11, Organism=Caenorhabditis elegans, GI115533608, Length=221, Percent_Identity=28.5067873303167, Blast_Score=74, Evalue=2e-13, Organism=Caenorhabditis elegans, GI212646699, Length=219, Percent_Identity=27.3972602739726, Blast_Score=72, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17552232, Length=222, Percent_Identity=25.6756756756757, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI71983516, Length=269, Percent_Identity=24.907063197026, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71983523, Length=269, Percent_Identity=24.907063197026, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71983510, Length=269, Percent_Identity=24.907063197026, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17541710, Length=232, Percent_Identity=29.3103448275862, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17510237, Length=336, Percent_Identity=21.7261904761905, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI115534520, Length=256, Percent_Identity=26.5625, Blast_Score=65, Evalue=8e-11, Organism=Caenorhabditis elegans, GI17558664, Length=214, Percent_Identity=30.3738317757009, Blast_Score=65, Evalue=8e-11, Organism=Caenorhabditis elegans, GI193202349, Length=233, Percent_Identity=26.6094420600858, Blast_Score=64, Evalue=8e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=265, Percent_Identity=27.5471698113208, Blast_Score=74, Evalue=3e-14, Organism=Saccharomyces cerevisiae, GI6323217, Length=236, Percent_Identity=27.5423728813559, Blast_Score=68, Evalue=3e-12, Organism=Drosophila melanogaster, GI24643674, Length=244, Percent_Identity=25.8196721311475, Blast_Score=76, Evalue=4e-14, Organism=Drosophila melanogaster, GI116007328, Length=229, Percent_Identity=25.764192139738, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI28574150, Length=229, Percent_Identity=25.764192139738, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24666092, Length=242, Percent_Identity=26.4462809917355, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI28573571, Length=247, Percent_Identity=24.6963562753036, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI161076684, Length=259, Percent_Identity=25.4826254826255, Blast_Score=69, Evalue=6e-12, Organism=Drosophila melanogaster, GI24581617, Length=259, Percent_Identity=25.4826254826255, Blast_Score=69, Evalue=6e-12, Organism=Drosophila melanogaster, GI24581615, Length=259, Percent_Identity=25.4826254826255, Blast_Score=69, Evalue=6e-12, Organism=Drosophila melanogaster, GI281362751, Length=275, Percent_Identity=21.0909090909091, Blast_Score=69, Evalue=7e-12, Organism=Drosophila melanogaster, GI161076682, Length=256, Percent_Identity=25.390625, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24650853, Length=248, Percent_Identity=22.1774193548387, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24650855, Length=248, Percent_Identity=22.1774193548387, Blast_Score=67, Evalue=3e-11, Organism=Drosophila melanogaster, GI17136662, Length=217, Percent_Identity=29.0322580645161, Blast_Score=65, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 40073; Mature: 39942
Theoretical pI: Translated: 6.17; Mature: 6.17
Prosite motif: PS00501 SPASE_I_1 ; PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTLNSNPAASTLSSDHLVNTQNEATGQHAAPLLLDIENLSVTFGKGARAFRAVDDVSLQ CCCCCCCCCCHHCCCCCEECCCCCCCCCCCCCEEEEEECCEEEECCCCHHHHHHHHHHEE LRQGEVLAVVGESGSGKSVTMMALMGLLPSSATVAANKMDFDGQHMLSLSGRERRKIIGK EECCCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCEEEECCCHHHHHHHHH DISMIFQNAMSCLNPSFTVEYQLAEVLKTHLGLKGDAARQRILELLELVEIPDAKNRLSV HHHHHHHHHHHHCCCCEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCEE YPHQLSGGMSQRIMIAMALACEPKLLIADEPTTALDVTVQAQIMDLLARLQREKQMAMVL CCHHHCCCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHCEEEEE ITHDLGLVAQNARDVAVMYAGQMVETNRVPEIFEQPSHPYTEALLQAIPELAIGQERLNS EECCCCHHHCCCCCEEEEEECCHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCHHHHHC LPGVVPSQYDRPKGCLLSPRCPYKQDKCDVPPPILPTPNGLVRCIQTDFPARTSTRFSNP CCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC SSESMGSAL CCHHHCCCC >Mature Secondary Structure TTLNSNPAASTLSSDHLVNTQNEATGQHAAPLLLDIENLSVTFGKGARAFRAVDDVSLQ CCCCCCCCCHHCCCCCEECCCCCCCCCCCCCEEEEEECCEEEECCCCHHHHHHHHHHEE LRQGEVLAVVGESGSGKSVTMMALMGLLPSSATVAANKMDFDGQHMLSLSGRERRKIIGK EECCCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCEEEECCCHHHHHHHHH DISMIFQNAMSCLNPSFTVEYQLAEVLKTHLGLKGDAARQRILELLELVEIPDAKNRLSV HHHHHHHHHHHHCCCCEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCEE YPHQLSGGMSQRIMIAMALACEPKLLIADEPTTALDVTVQAQIMDLLARLQREKQMAMVL CCHHHCCCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHCEEEEE ITHDLGLVAQNARDVAVMYAGQMVETNRVPEIFEQPSHPYTEALLQAIPELAIGQERLNS EECCCCHHHCCCCCEEEEEECCHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCHHHHHC LPGVVPSQYDRPKGCLLSPRCPYKQDKCDVPPPILPTPNGLVRCIQTDFPARTSTRFSNP CCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC SSESMGSAL CCHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]