| Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009524 |
| Length | 2,978,976 |
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The map label for this gene is 148653000
Identifier: 148653000
GI number: 148653000
Start: 1459730
End: 1460989
Strand: Direct
Name: 148653000
Synonym: PsycPRwf_1194
Alternate gene names: NA
Gene position: 1459730-1460989 (Clockwise)
Preceding gene: 148652999
Following gene: 148653001
Centisome position: 49.0
GC content: 45.95
Gene sequence:
>1260_bases ATGAGCACATCTTCGACTCACGCCTCGCCCAAAGACAAAGGCATTAATTGGCAAGCTTTTGGTCCCGGTATCTTACTGGC CTCAGCAGCCATTGGGGGCTCACATCTTATCTCATCGACACAAGCTGGCGCGTTATATGGTTGGCAATTGGCGATTATGA TTATCCTCGCCAACTTTTTTAAATATCCCTTTTTTAAATTCGGTACCGACTATGTTTATGAAACCGGAGAGTCGTTGGTT GCCGGATATGCCAAAAAATCACGCCTATATCTGTGGGCATTTTTTATCTTATCTTTGGCAGCTTCGGTCATTAGCACCGG TGCAGTGGCGCTATTGGCGGCAGTTATTCTAGGGTTTATGTTGCCTGAAAGCTGGGGGCTATCTAATGGTGTTTTGTCGA TTATCGTCATGGGCGTGTCTTGGCTATTTTTGATTCTCGGTCACTACAAGATGCTTGATAAGCTTACCAAATGGATTATG GTGGCGCTGACTGTGACCACGTTAGCTGCGGTGATTATTGCGGCAGGCAAGCCTACCATTATGGCACCAGATTTTGTGGC CGCCTCACCTTGGAATTTGGCCACCTTGGGCTTTATTGTGGCCTTAATGGGCTGGATGCCGGCACCACTTGAGTTCTCAG CGATTAATTCTATGTGGATTTCGGCCAAAGTAAAATCGGACCACACCACACACCGTCAGGGCTTAATTGACTTTAATGTC GGTTTTATCGCCACCTCTTTATTGGCACTGGTATTTTTGGCATTGGGTGTGTTTGTACAGTATGGCTCAGGCGTTGAAAT CCAGACCCAAGGCGGTGCTTATGTGGGGCAGCTGATTAGTATGTATACGGCCACCATTGGTGAGTGGTCACGTCTATTGG TAGCATTTGTGGCCTTTATGGTGATGTTTGGTACCACCATTACCTGTGCTGATGGTTATGGCCGTATCAATGCCGAAAGC TTACGTTTAATCAAAGACGATGCCAATATTTCACAACAGCAAATCATCCTGTGGACCACCTACTGTATTGTGGGCGGCTA TATTATTATCACCTTCTTTACCGGGCAGCTGGGCGCTATGCTAAAGTTTGCTATGATTACAGCTTTTGTTTCAGCCCCAA TTTTTGGTTGGTTAAATTACTCACTAGCCAAAGATCAGCAGCACCTATCAGCTGGCATGAAGCTGTACAGTATTGCCGGC TTGATCTTCTTAGGCGGTATTGCTTTGTTGTTTATGGCGCAATTATTTGGCCTAATCTAA
Upstream 100 bases:
>100_bases GTAAAAACTTAAATGAATTTAAAAAACACACCTACTGCACCTATGAGTAATCTTATAAACCAAGCCCTTTAAAATAAGCA CAAATTAAGGTTAACCTGCT
Downstream 100 bases:
>100_bases AAAAACTTCTCTGTTTAACCTCTTTAAAAGACCTTACAATAGCCGTAAGGTCTTTTTTTATATCCCCTCATATTTAGCTG GCTTAAGCGCAGGGTTGGAT
Product: manganese transporter NRAMP
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 419; Mature: 418
Protein sequence:
>419_residues MSTSSTHASPKDKGINWQAFGPGILLASAAIGGSHLISSTQAGALYGWQLAIMIILANFFKYPFFKFGTDYVYETGESLV AGYAKKSRLYLWAFFILSLAASVISTGAVALLAAVILGFMLPESWGLSNGVLSIIVMGVSWLFLILGHYKMLDKLTKWIM VALTVTTLAAVIIAAGKPTIMAPDFVAASPWNLATLGFIVALMGWMPAPLEFSAINSMWISAKVKSDHTTHRQGLIDFNV GFIATSLLALVFLALGVFVQYGSGVEIQTQGGAYVGQLISMYTATIGEWSRLLVAFVAFMVMFGTTITCADGYGRINAES LRLIKDDANISQQQIILWTTYCIVGGYIIITFFTGQLGAMLKFAMITAFVSAPIFGWLNYSLAKDQQHLSAGMKLYSIAG LIFLGGIALLFMAQLFGLI
Sequences:
>Translated_419_residues MSTSSTHASPKDKGINWQAFGPGILLASAAIGGSHLISSTQAGALYGWQLAIMIILANFFKYPFFKFGTDYVYETGESLV AGYAKKSRLYLWAFFILSLAASVISTGAVALLAAVILGFMLPESWGLSNGVLSIIVMGVSWLFLILGHYKMLDKLTKWIM VALTVTTLAAVIIAAGKPTIMAPDFVAASPWNLATLGFIVALMGWMPAPLEFSAINSMWISAKVKSDHTTHRQGLIDFNV GFIATSLLALVFLALGVFVQYGSGVEIQTQGGAYVGQLISMYTATIGEWSRLLVAFVAFMVMFGTTITCADGYGRINAES LRLIKDDANISQQQIILWTTYCIVGGYIIITFFTGQLGAMLKFAMITAFVSAPIFGWLNYSLAKDQQHLSAGMKLYSIAG LIFLGGIALLFMAQLFGLI >Mature_418_residues STSSTHASPKDKGINWQAFGPGILLASAAIGGSHLISSTQAGALYGWQLAIMIILANFFKYPFFKFGTDYVYETGESLVA GYAKKSRLYLWAFFILSLAASVISTGAVALLAAVILGFMLPESWGLSNGVLSIIVMGVSWLFLILGHYKMLDKLTKWIMV ALTVTTLAAVIIAAGKPTIMAPDFVAASPWNLATLGFIVALMGWMPAPLEFSAINSMWISAKVKSDHTTHRQGLIDFNVG FIATSLLALVFLALGVFVQYGSGVEIQTQGGAYVGQLISMYTATIGEWSRLLVAFVAFMVMFGTTITCADGYGRINAESL RLIKDDANISQQQIILWTTYCIVGGYIIITFFTGQLGAMLKFAMITAFVSAPIFGWLNYSLAKDQQHLSAGMKLYSIAGL IFLGGIALLFMAQLFGLI
Specific function: Unknown
COG id: COG1914
COG function: function code P; Mn2+ and Fe2+ transporters of the NRAMP family
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45198; Mature: 45067
Theoretical pI: Translated: 9.10; Mature: 9.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTSSTHASPKDKGINWQAFGPGILLASAAIGGSHLISSTQAGALYGWQLAIMIILANFF CCCCCCCCCCCCCCCCEEEECCHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHHH KYPFFKFGTDYVYETGESLVAGYAKKSRLYLWAFFILSLAASVISTGAVALLAAVILGFM HCCHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LPESWGLSNGVLSIIVMGVSWLFLILGHYKMLDKLTKWIMVALTVTTLAAVIIAAGKPTI CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE MAPDFVAASPWNLATLGFIVALMGWMPAPLEFSAINSMWISAKVKSDHTTHRQGLIDFNV ECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHCEEEEEEECCCCCHHHCCCEEECH GFIATSLLALVFLALGVFVQYGSGVEIQTQGGAYVGQLISMYTATIGEWSRLLVAFVAFM HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH VMFGTTITCADGYGRINAESLRLIKDDANISQQQIILWTTYCIVGGYIIITFFTGQLGAM HHHCCEEEEECCCCCCCHHHHHEEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHH LKFAMITAFVSAPIFGWLNYSLAKDQQHLSAGMKLYSIAGLIFLGGIALLFMAQLFGLI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure STSSTHASPKDKGINWQAFGPGILLASAAIGGSHLISSTQAGALYGWQLAIMIILANFF CCCCCCCCCCCCCCCEEEECCHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHHH KYPFFKFGTDYVYETGESLVAGYAKKSRLYLWAFFILSLAASVISTGAVALLAAVILGFM HCCHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LPESWGLSNGVLSIIVMGVSWLFLILGHYKMLDKLTKWIMVALTVTTLAAVIIAAGKPTI CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE MAPDFVAASPWNLATLGFIVALMGWMPAPLEFSAINSMWISAKVKSDHTTHRQGLIDFNV ECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHCEEEEEEECCCCCHHHCCCEEECH GFIATSLLALVFLALGVFVQYGSGVEIQTQGGAYVGQLISMYTATIGEWSRLLVAFVAFM HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH VMFGTTITCADGYGRINAESLRLIKDDANISQQQIILWTTYCIVGGYIIITFFTGQLGAM HHHCCEEEEECCCCCCCHHHHHEEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHH LKFAMITAFVSAPIFGWLNYSLAKDQQHLSAGMKLYSIAGLIFLGGIALLFMAQLFGLI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11248100 [H]