Click here to switch to the map view.

The map label for this gene is potC [H]

Identifier: 148652870

GI number: 148652870

Start: 1283349

End: 1284125

Strand: Direct

Name: potC [H]

Synonym: PsycPRwf_1063

Alternate gene names: 148652870

Gene position: 1283349-1284125 (Clockwise)

Preceding gene: 148652869

Following gene: 148652871

Centisome position: 43.08

GC content: 44.66

Gene sequence:

>777_bases
ATGAGTAGTTCAATGAAGTGGCTGTCTCGCCTCTATTTAACCCTAATGTATTTGATTATGTTTGCGCCAATTATGGTCAT
GGTGGTGTTCTCATTTAACGCCTCCAAGATTGGTTATCACTGGGGCGGCTTTAGTTTACATTGGTATCATGAGTTGTTTA
GCAATGAGGCTATGATTCAAGCGGCCATTAATTCAGTGTTGTTGGCAGTGGTTGCGGCGACGGTTACCACAGTGATTGGC
GGGCTTACCGCATTGTCTTTTCAGCGTTATGACTTTAAGGGTAAAAGCGTACTGCAAAGCTTATTGTTTGTGCTGATGAT
GTCGCCTGAGATTGTGCTGGCCATCTCGCTATTGGCACTGTTTTTAATCATAGGTATTGAGCTGGGCTTTATAACCTTGT
TATTAGCGCACATTACCTTTTGTCTGCCTTTTGTGGTGATTACCGTATCAGCCCGATTATCGAGTATGGACAATAGTGTA
TTGGAAGCCGCCCGTGACTTGGGTGCCAGTGAATTTACTATGATTCGTACGGTACTGTTGCCCATTATCCTGCCTGCGGT
ATTGGCCGGCTGGGTATTGGCCTTTACTTTATCGCTGGATGATGTGGTGGTGTCTACCTTCAATACTGGTGCCAACTTTG
AGATTTTACCGCTACAAATTTATTCTATGGTGCGGGTCGGGGTGAAGCCTGAGGTCAATGCGGTGGGTACCTTATTATTG
GCCATTTCACTGGTGGGCTTGGTCATCTCTCAATTACTACTTCTTAAAAAACGTTAA

Upstream 100 bases:

>100_bases
GCTGTTGACCTTAACGATGGCAATATTGATTGCCGCTTATTACGCCAGCAGCAAACGCATTGGCAAAACTGACCATAATG
AAGTGGCATAGGGGAGTTGT

Downstream 100 bases:

>100_bases
GGATTTATGATGGCTAATAACAACTTATTCTCACGCCGACGTTTTTTGGGAATGACAGGTGCAGGTTTGGTTGGCTTATC
GGGACTGGGTCTAGCCGGCT

Product: spermidine/putrescine ABC transporter membrane protein

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MSSSMKWLSRLYLTLMYLIMFAPIMVMVVFSFNASKIGYHWGGFSLHWYHELFSNEAMIQAAINSVLLAVVAATVTTVIG
GLTALSFQRYDFKGKSVLQSLLFVLMMSPEIVLAISLLALFLIIGIELGFITLLLAHITFCLPFVVITVSARLSSMDNSV
LEAARDLGASEFTMIRTVLLPIILPAVLAGWVLAFTLSLDDVVVSTFNTGANFEILPLQIYSMVRVGVKPEVNAVGTLLL
AISLVGLVISQLLLLKKR

Sequences:

>Translated_258_residues
MSSSMKWLSRLYLTLMYLIMFAPIMVMVVFSFNASKIGYHWGGFSLHWYHELFSNEAMIQAAINSVLLAVVAATVTTVIG
GLTALSFQRYDFKGKSVLQSLLFVLMMSPEIVLAISLLALFLIIGIELGFITLLLAHITFCLPFVVITVSARLSSMDNSV
LEAARDLGASEFTMIRTVLLPIILPAVLAGWVLAFTLSLDDVVVSTFNTGANFEILPLQIYSMVRVGVKPEVNAVGTLLL
AISLVGLVISQLLLLKKR
>Mature_257_residues
SSSMKWLSRLYLTLMYLIMFAPIMVMVVFSFNASKIGYHWGGFSLHWYHELFSNEAMIQAAINSVLLAVVAATVTTVIGG
LTALSFQRYDFKGKSVLQSLLFVLMMSPEIVLAISLLALFLIIGIELGFITLLLAHITFCLPFVVITVSARLSSMDNSVL
EAARDLGASEFTMIRTVLLPIILPAVLAGWVLAFTLSLDDVVVSTFNTGANFEILPLQIYSMVRVGVKPEVNAVGTLLLA
ISLVGLVISQLLLLKKR

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=246, Percent_Identity=56.0975609756098, Blast_Score=280, Evalue=5e-77,
Organism=Escherichia coli, GI1787081, Length=254, Percent_Identity=37.7952755905512, Blast_Score=164, Evalue=7e-42,
Organism=Escherichia coli, GI1787714, Length=224, Percent_Identity=33.0357142857143, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1788764, Length=206, Percent_Identity=27.6699029126214, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28267; Mature: 28135

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSSMKWLSRLYLTLMYLIMFAPIMVMVVFSFNASKIGYHWGGFSLHWYHELFSNEAMIQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCHHHHH
AAINSVLLAVVAATVTTVIGGLTALSFQRYDFKGKSVLQSLLFVLMMSPEIVLAISLLAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
FLIIGIELGFITLLLAHITFCLPFVVITVSARLSSMDNSVLEAARDLGASEFTMIRTVLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
PIILPAVLAGWVLAFTLSLDDVVVSTFNTGANFEILPLQIYSMVRVGVKPEVNAVGTLLL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHCCCCCHHHHHHHHH
AISLVGLVISQLLLLKKR
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SSSMKWLSRLYLTLMYLIMFAPIMVMVVFSFNASKIGYHWGGFSLHWYHELFSNEAMIQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCHHHHH
AAINSVLLAVVAATVTTVIGGLTALSFQRYDFKGKSVLQSLLFVLMMSPEIVLAISLLAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
FLIIGIELGFITLLLAHITFCLPFVVITVSARLSSMDNSVLEAARDLGASEFTMIRTVLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
PIILPAVLAGWVLAFTLSLDDVVVSTFNTGANFEILPLQIYSMVRVGVKPEVNAVGTLLL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHCCCCCHHHHHHHHH
AISLVGLVISQLLLLKKR
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]