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The map label for this gene is pal [C]

Identifier: 148652830

GI number: 148652830

Start: 1217270

End: 1218070

Strand: Direct

Name: pal [C]

Synonym: PsycPRwf_1023

Alternate gene names: 148652830

Gene position: 1217270-1218070 (Clockwise)

Preceding gene: 148652826

Following gene: 148652833

Centisome position: 40.86

GC content: 39.45

Gene sequence:

>801_bases
ATGCGAAATCGTAATAAGTTATTAACTGTACTAATAATGCTGATTGCTATGACAGGATGCCAAACAGTCTCCACTCCTAT
CGAACAAGGTATCAGTACGGCAGATGGTATGCGTCAATTGAACAAAATTGAAAGCATACAGTGGGATAAAACTGGAGAAG
CTTTTAGCATCCTAAATAACCTCCAATTAGATGCTAATCAAAGCCGTATCGTGTTTATACACGATCACTTAGATCAAACT
ATCCCACATAGTATAAATATCGATGTTGATAGCGCCTTTCATACTAGCCTACATCCTGGGCAATATTCACAATCTATCGT
TTGTAATGGCGAACAAGTTATTGGCATTCAAAACAGTGCCGTTAATACCAATACCTTTAACGATCAAATAGTGACCCCTT
TCTTCCAACCCCAGCAAACCTATTATTATCAAGTTAGCTTAGACCCTCAATCAGACAAAGCGTCAATTAACCCTGTTGAA
GAGGCAGTAGCGTTTCAGCTGTTACAAGGCTTGAGCGAACAAACCCATCAAAAAAATAGAGTGGAAGCAAAAGACTGTAC
TGTTATTGAAAAAGAGACTGAGACCGTCGAACCACCTGCTCCAGTTGAAGTAAATAAGCCGATCACCTTAGATGTGTTGT
TTGACTTTGACAGCGCTAAGATTAAATCTACTTACCAACAGACTCTTCGTGATGTTGCTCAATTTTTATCAGCCAATGCA
AATACTAAAGCAGTCTTAGAAGGTCATACCGACAGTACAGGTCCAGCAAGCTATAACTTAATCCTATCTCAAGCCCGTTG
A

Upstream 100 bases:

>100_bases
TGCTTGGATTTACTTTAATACCCCTTATTTTTAAGTATAGTATTTTTTTAATCTAACATCCTTCAGTGGCTTAAATCTAG
GAATGTGGGTTAGGAATTAT

Downstream 100 bases:

>100_bases
CCTCTGCTGTCAACAACGGAGAAAAACATTTGGTAGATTTCATCAGGCAGCCTGACGGTAAAAGTCTTGGAATACTTGAG
TAGGTGACTTAAATCCTAAC

Product: outer membrane protein

Products: NA

Alternate protein names: Outer Membrane Porin F; OmpA Family Protein

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MRNRNKLLTVLIMLIAMTGCQTVSTPIEQGISTADGMRQLNKIESIQWDKTGEAFSILNNLQLDANQSRIVFIHDHLDQT
IPHSINIDVDSAFHTSLHPGQYSQSIVCNGEQVIGIQNSAVNTNTFNDQIVTPFFQPQQTYYYQVSLDPQSDKASINPVE
EAVAFQLLQGLSEQTHQKNRVEAKDCTVIEKETETVEPPAPVEVNKPITLDVLFDFDSAKIKSTYQQTLRDVAQFLSANA
NTKAVLEGHTDSTGPASYNLILSQAR

Sequences:

>Translated_266_residues
MRNRNKLLTVLIMLIAMTGCQTVSTPIEQGISTADGMRQLNKIESIQWDKTGEAFSILNNLQLDANQSRIVFIHDHLDQT
IPHSINIDVDSAFHTSLHPGQYSQSIVCNGEQVIGIQNSAVNTNTFNDQIVTPFFQPQQTYYYQVSLDPQSDKASINPVE
EAVAFQLLQGLSEQTHQKNRVEAKDCTVIEKETETVEPPAPVEVNKPITLDVLFDFDSAKIKSTYQQTLRDVAQFLSANA
NTKAVLEGHTDSTGPASYNLILSQAR
>Mature_266_residues
MRNRNKLLTVLIMLIAMTGCQTVSTPIEQGISTADGMRQLNKIESIQWDKTGEAFSILNNLQLDANQSRIVFIHDHLDQT
IPHSINIDVDSAFHTSLHPGQYSQSIVCNGEQVIGIQNSAVNTNTFNDQIVTPFFQPQQTYYYQVSLDPQSDKASINPVE
EAVAFQLLQGLSEQTHQKNRVEAKDCTVIEKETETVEPPAPVEVNKPITLDVLFDFDSAKIKSTYQQTLRDVAQFLSANA
NTKAVLEGHTDSTGPASYNLILSQAR

Specific function: Thought To Play A Role In Bacterial Envelope Integrity. Very Strongly Associated With The Peptidoglycan. [C]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Attached To The Outer Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29563; Mature: 29563

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNRNKLLTVLIMLIAMTGCQTVSTPIEQGISTADGMRQLNKIESIQWDKTGEAFSILNN
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHH
LQLDANQSRIVFIHDHLDQTIPHSINIDVDSAFHTSLHPGQYSQSIVCNGEQVIGIQNSA
CEECCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEECCCEEEEEECCC
VNTNTFNDQIVTPFFQPQQTYYYQVSLDPQSDKASINPVEEAVAFQLLQGLSEQTHQKNR
CCCCCCCCCEECCEECCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
VEAKDCTVIEKETETVEPPAPVEVNKPITLDVLFDFDSAKIKSTYQQTLRDVAQFLSANA
CCCCCCEEEECCCCCCCCCCCEECCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCC
NTKAVLEGHTDSTGPASYNLILSQAR
CCEEEEECCCCCCCCCEEEEEEECCC
>Mature Secondary Structure
MRNRNKLLTVLIMLIAMTGCQTVSTPIEQGISTADGMRQLNKIESIQWDKTGEAFSILNN
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHH
LQLDANQSRIVFIHDHLDQTIPHSINIDVDSAFHTSLHPGQYSQSIVCNGEQVIGIQNSA
CEECCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEECCCEEEEEECCC
VNTNTFNDQIVTPFFQPQQTYYYQVSLDPQSDKASINPVEEAVAFQLLQGLSEQTHQKNR
CCCCCCCCCEECCEECCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
VEAKDCTVIEKETETVEPPAPVEVNKPITLDVLFDFDSAKIKSTYQQTLRDVAQFLSANA
CCCCCCEEEECCCCCCCCCCCEECCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCC
NTKAVLEGHTDSTGPASYNLILSQAR
CCEEEEECCCCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA