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The map label for this gene is rutD [H]

Identifier: 148652807

GI number: 148652807

Start: 1189695

End: 1190552

Strand: Direct

Name: rutD [H]

Synonym: PsycPRwf_1000

Alternate gene names: 148652807

Gene position: 1189695-1190552 (Clockwise)

Preceding gene: 148652803

Following gene: 148652808

Centisome position: 39.94

GC content: 41.14

Gene sequence:

>858_bases
ATGCCAGTACACACATCGCTCTATCAATGGACAACTGTACCTACTGAGTTTATTAGTGCAGATGGCATTGGCTTTGCCTA
TCGTGAGTATGGTCAGCAAAATGGTGGCACACCCATCATATTTTTAAACCATTTGGCAGCGGTTTTAGACAATTGGGATC
CTCGCATTATGGATGGTATCGCCCAAACACATCACGTTGTGGCGTTTGATAATCGCGGTGTGGGTGCATCGACAGGGAGA
GTAGCTGAATCGATAGAGCAAATGGCTGATGACGCTATTACTTTCATTAAAGCAAAAGGCTTTGATAAGGTTGATTTATT
TGGCTTCTCTATGGGCGGTATGATTTCACAAGAAATAGCGTTAAAAAAACCCAGTTTGGTGAGAAAAATGGTGATATCGG
GTACAGGGCCCGCTGGAGGGAGGGGCATCTCTAAAGTCAATAGAGTGGCTAATTTTGAGCTTCTTAGGGGCTTGCTGACA
CGTCAAGATCCTAAAGTTTTTCTATTTTTCACGCGTACTGACAATGGAAAGCGTGCGGCAAAAGCGTTTATTCAACATAT
TAATGAACGGACTCAAGATCTTGACAAAAAAATCACTATTGCAGCATATCGTGCTCAACTTAAAGCATTGAAAAAGTGGG
GTAACAAAAACCCAGTCGATCTTTCTGTTATCAAACAGCCTACTTTGGTCGCCAATGGAGAGCATGATCGTATGGTGCCA
ACGCTCAATACTTATGATTTAGCAAAGCGATTGCCCAACAGTCAGTTAATCATATATCCAGATGCTGGGCATGGTGGTAT
TTTTCAAAATCATAAAGATTTTATAAAACAGACGCTTAATTTTTTAGCGAATAATTAA

Upstream 100 bases:

>100_bases
TTACTATTTTTTTAGTAGCAGCTTTTCTTTTAATAGTGGCTTTTCTGTTATTAGTGACTTGTATTTTAAGATTTGATTTA
CACGCCATAGGAGACACTCA

Downstream 100 bases:

>100_bases
ATTTATATTAATATTTTTTTAAGGCATCTATTGTAGGACTACGACTCATTTAACGGCTCCAACGTAGTTTATCGAATATT
CATGCGCTTGGCCTCAAGCA

Product: alpha/beta hydrolase fold protein

Products: 2-oxopent-4-enoate; succinate [C]

Alternate protein names: Aminohydrolase [H]

Number of amino acids: Translated: 285; Mature: 284

Protein sequence:

>285_residues
MPVHTSLYQWTTVPTEFISADGIGFAYREYGQQNGGTPIIFLNHLAAVLDNWDPRIMDGIAQTHHVVAFDNRGVGASTGR
VAESIEQMADDAITFIKAKGFDKVDLFGFSMGGMISQEIALKKPSLVRKMVISGTGPAGGRGISKVNRVANFELLRGLLT
RQDPKVFLFFTRTDNGKRAAKAFIQHINERTQDLDKKITIAAYRAQLKALKKWGNKNPVDLSVIKQPTLVANGEHDRMVP
TLNTYDLAKRLPNSQLIIYPDAGHGGIFQNHKDFIKQTLNFLANN

Sequences:

>Translated_285_residues
MPVHTSLYQWTTVPTEFISADGIGFAYREYGQQNGGTPIIFLNHLAAVLDNWDPRIMDGIAQTHHVVAFDNRGVGASTGR
VAESIEQMADDAITFIKAKGFDKVDLFGFSMGGMISQEIALKKPSLVRKMVISGTGPAGGRGISKVNRVANFELLRGLLT
RQDPKVFLFFTRTDNGKRAAKAFIQHINERTQDLDKKITIAAYRAQLKALKKWGNKNPVDLSVIKQPTLVANGEHDRMVP
TLNTYDLAKRLPNSQLIIYPDAGHGGIFQNHKDFIKQTLNFLANN
>Mature_284_residues
PVHTSLYQWTTVPTEFISADGIGFAYREYGQQNGGTPIIFLNHLAAVLDNWDPRIMDGIAQTHHVVAFDNRGVGASTGRV
AESIEQMADDAITFIKAKGFDKVDLFGFSMGGMISQEIALKKPSLVRKMVISGTGPAGGRGISKVNRVANFELLRGLLTR
QDPKVFLFFTRTDNGKRAAKAFIQHINERTQDLDKKITIAAYRAQLKALKKWGNKNPVDLSVIKQPTLVANGEHDRMVPT
LNTYDLAKRLPNSQLIIYPDAGHGGIFQNHKDFIKQTLNFLANN

Specific function: May increase the rate of spontaneous hydrolysis of aminoacrylate to malonic semialdehyde. Required to remove a toxic intermediate produce in the pyrimidine nitrogen degradation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AB hydrolase superfamily. Hydrolase RutD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR019913 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: 3.7.1.- [C]

Molecular weight: Translated: 31595; Mature: 31463

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVHTSLYQWTTVPTEFISADGIGFAYREYGQQNGGTPIIFLNHLAAVLDNWDPRIMDGI
CCCCCCCEEEECCCHHHHCCCCCCHHHHHHCCCCCCCCEEEHHHHHHHHCCCCHHHHHHH
AQTHHVVAFDNRGVGASTGRVAESIEQMADDAITFIKAKGFDKVDLFGFSMGGMISQEIA
HHHCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHH
LKKPSLVRKMVISGTGPAGGRGISKVNRVANFELLRGLLTRQDPKVFLFFTRTDNGKRAA
HCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHH
KAFIQHINERTQDLDKKITIAAYRAQLKALKKWGNKNPVDLSVIKQPTLVANGEHDRMVP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCCCCC
TLNTYDLAKRLPNSQLIIYPDAGHGGIFQNHKDFIKQTLNFLANN
CCCHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PVHTSLYQWTTVPTEFISADGIGFAYREYGQQNGGTPIIFLNHLAAVLDNWDPRIMDGI
CCCCCCEEEECCCHHHHCCCCCCHHHHHHCCCCCCCCEEEHHHHHHHHCCCCHHHHHHH
AQTHHVVAFDNRGVGASTGRVAESIEQMADDAITFIKAKGFDKVDLFGFSMGGMISQEIA
HHHCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHH
LKKPSLVRKMVISGTGPAGGRGISKVNRVANFELLRGLLTRQDPKVFLFFTRTDNGKRAA
HCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHH
KAFIQHINERTQDLDKKITIAAYRAQLKALKKWGNKNPVDLSVIKQPTLVANGEHDRMVP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCCCCC
TLNTYDLAKRLPNSQLIIYPDAGHGGIFQNHKDFIKQTLNFLANN
CCCHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: 2-hydroxy-6-ketononadienedicarboxylate; H2O [C]

Specific reaction: 2-hydroxy-6-ketononadienedicarboxylate + H2O = 2-oxopent-4-enoate + succinate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA