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The map label for this gene is sohB [H]

Identifier: 148652799

GI number: 148652799

Start: 1178448

End: 1179446

Strand: Direct

Name: sohB [H]

Synonym: PsycPRwf_0992

Alternate gene names: 148652799

Gene position: 1178448-1179446 (Clockwise)

Preceding gene: 148652788

Following gene: 148652800

Centisome position: 39.56

GC content: 45.45

Gene sequence:

>999_bases
ATGTTGTTTTATCCGGCCAAAAACCCAGTTGAGTTAAAAATAGTTCATTTAAATAAAAGTCAAAACGAGCGTCGCAAGCA
TCTTATTGAAGCGACAGGGGACAAAAATGCGGTAAAACAATTCCAAAAAGCACTGGCCAAAAAAGCCAAGCAAAAACTAA
AAGACAAGTCTAAAGCGAAAGCCAAGCAAAAGCGTGTATTTGTGCTTGATTTTGATGGTGATATTAAAGCCAGTGCCGTT
AAGCACTTGCGCGAGGAGATCAGCACCATCATCAGCGGCGCCAATAAGGGTGATGAGGTGGTTATTCGTCTAGAGTCAGG
CGGCGGCATGGTACATAGCTATGGCTTGGCTGCAGCTCAATTGGTGCGCCTCAAAGACGCCGGCTTAACGCTCACCATTG
CCGTGGATAAAATCGCTGCCAGTGGGGGTTACATGATGGCCTGTGTGGCAGATAAAATTTTAGCAGCCCCGTTTGCCGTT
ATCGGCTCAATTGGTGTGGTCTCACAAATGCCAAACTTTAATAAATGGCTAAAAAAACACGATATCGATTATGAAATGTT
TACCGCAGGTGAGTACAAGCGTACGGTGACTGTTTTTGGTGAGAATGATGATGACGATCGTGCCAAATACACTGAGGAGC
TAGAGCAAACTCATCAATTATTTAAGCACTTTGTGACCACCTATCGCCCGCAGCTGGACTTAACCAAAGTGGCCAATGGC
GATCATTGGTATGGTGAGGATGCGCTGCATTTAAACCTGGTCGATGAGCTGACGACCTCGGATGCATATTTGCTAAAGCA
AATGGATGAGCATCAAGTGTATGCCATTTTATCACGCCAAAAACCCACTTTGGCTGAGAAGTTGGGTTTTGCTAACGCCG
CTCATTCGGCGGTATCAGGCTTGGTAAGCACCGCAACCAAGTCAGCGTTGACTGTGCTGGGTGATAAATTGCCTGAGGTC
ATGAGCAAGATTGAGCAAGACAAGCGTTTAAAGTTTTAA

Upstream 100 bases:

>100_bases
AACGCATATTAATAACAATATGATAAAAAATTATTTGTGCTAGAGCGTTATTATATCCCATCTAGTTTTCGATATGTTTT
ATACCCTTAAAGGAATATTT

Downstream 100 bases:

>100_bases
TGGTTGGATAAACTATCAGCCACTTGATGTGAAGAAAAAGCGACCTTAAGGTCGCTTTTTTTGATGGATTTATCTTGTAA
TAACCTGAATGATAAGGATT

Product: putative periplasmic protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MLFYPAKNPVELKIVHLNKSQNERRKHLIEATGDKNAVKQFQKALAKKAKQKLKDKSKAKAKQKRVFVLDFDGDIKASAV
KHLREEISTIISGANKGDEVVIRLESGGGMVHSYGLAAAQLVRLKDAGLTLTIAVDKIAASGGYMMACVADKILAAPFAV
IGSIGVVSQMPNFNKWLKKHDIDYEMFTAGEYKRTVTVFGENDDDDRAKYTEELEQTHQLFKHFVTTYRPQLDLTKVANG
DHWYGEDALHLNLVDELTTSDAYLLKQMDEHQVYAILSRQKPTLAEKLGFANAAHSAVSGLVSTATKSALTVLGDKLPEV
MSKIEQDKRLKF

Sequences:

>Translated_332_residues
MLFYPAKNPVELKIVHLNKSQNERRKHLIEATGDKNAVKQFQKALAKKAKQKLKDKSKAKAKQKRVFVLDFDGDIKASAV
KHLREEISTIISGANKGDEVVIRLESGGGMVHSYGLAAAQLVRLKDAGLTLTIAVDKIAASGGYMMACVADKILAAPFAV
IGSIGVVSQMPNFNKWLKKHDIDYEMFTAGEYKRTVTVFGENDDDDRAKYTEELEQTHQLFKHFVTTYRPQLDLTKVANG
DHWYGEDALHLNLVDELTTSDAYLLKQMDEHQVYAILSRQKPTLAEKLGFANAAHSAVSGLVSTATKSALTVLGDKLPEV
MSKIEQDKRLKF
>Mature_332_residues
MLFYPAKNPVELKIVHLNKSQNERRKHLIEATGDKNAVKQFQKALAKKAKQKLKDKSKAKAKQKRVFVLDFDGDIKASAV
KHLREEISTIISGANKGDEVVIRLESGGGMVHSYGLAAAQLVRLKDAGLTLTIAVDKIAASGGYMMACVADKILAAPFAV
IGSIGVVSQMPNFNKWLKKHDIDYEMFTAGEYKRTVTVFGENDDDDRAKYTEELEQTHQLFKHFVTTYRPQLDLTKVANG
DHWYGEDALHLNLVDELTTSDAYLLKQMDEHQVYAILSRQKPTLAEKLGFANAAHSAVSGLVSTATKSALTVLGDKLPEV
MSKIEQDKRLKF

Specific function: Possible protease [H]

COG id: COG0616

COG function: function code OU; Periplasmic serine proteases (ClpP class)

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S49 family [H]

Homologues:

Organism=Escherichia coli, GI1787527, Length=294, Percent_Identity=50, Blast_Score=278, Evalue=2e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002142
- InterPro:   IPR013703 [H]

Pfam domain/function: PF01343 Peptidase_S49; PF08496 Peptidase_S49_N [H]

EC number: 3.4.21.-

Molecular weight: Translated: 36891; Mature: 36891

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFYPAKNPVELKIVHLNKSQNERRKHLIEATGDKNAVKQFQKALAKKAKQKLKDKSKAK
CEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AKQKRVFVLDFDGDIKASAVKHLREEISTIISGANKGDEVVIRLESGGGMVHSYGLAAAQ
HHHCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEHHHHHHHH
LVRLKDAGLTLTIAVDKIAASGGYMMACVADKILAAPFAVIGSIGVVSQMPNFNKWLKKH
HHHEECCCEEEEEEEEHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHC
DIDYEMFTAGEYKRTVTVFGENDDDDRAKYTEELEQTHQLFKHFVTTYRPQLDLTKVANG
CCCEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCC
DHWYGEDALHLNLVDELTTSDAYLLKQMDEHQVYAILSRQKPTLAEKLGFANAAHSAVSG
CCCCCCCEEEEEEHHHHCCCHHHHHHHCCCHHHHHHHHCCCCHHHHHHCCCHHHHHHHHH
LVSTATKSALTVLGDKLPEVMSKIEQDKRLKF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLFYPAKNPVELKIVHLNKSQNERRKHLIEATGDKNAVKQFQKALAKKAKQKLKDKSKAK
CEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AKQKRVFVLDFDGDIKASAVKHLREEISTIISGANKGDEVVIRLESGGGMVHSYGLAAAQ
HHHCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEHHHHHHHH
LVRLKDAGLTLTIAVDKIAASGGYMMACVADKILAAPFAVIGSIGVVSQMPNFNKWLKKH
HHHEECCCEEEEEEEEHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHC
DIDYEMFTAGEYKRTVTVFGENDDDDRAKYTEELEQTHQLFKHFVTTYRPQLDLTKVANG
CCCEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCC
DHWYGEDALHLNLVDELTTSDAYLLKQMDEHQVYAILSRQKPTLAEKLGFANAAHSAVSG
CCCCCCCEEEEEEHHHHCCCHHHHHHHCCCHHHHHHHHCCCCHHHHHHCCCHHHHHHHHH
LVSTATKSALTVLGDKLPEVMSKIEQDKRLKF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases) [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]