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The map label for this gene is rtcB [H]

Identifier: 148652667

GI number: 148652667

Start: 1014796

End: 1016010

Strand: Direct

Name: rtcB [H]

Synonym: PsycPRwf_0858

Alternate gene names: 148652667

Gene position: 1014796-1016010 (Clockwise)

Preceding gene: 148652665

Following gene: 148652668

Centisome position: 34.07

GC content: 47.57

Gene sequence:

>1215_bases
ATGGGCTTACAGCTAATTTTGAATGAAAACAGTAAAAAGGGTGTACCCGTTAAGGTGTATACCCAAGATATCGCACAAGA
GGCGATACAGCAATTACGTAATATGGCGCAGCTAGAATTTGTGCACTCACACATCGCAGTGATGCCAGATGTACACGTGG
GCAAAGGCGCAACGGTGGGCAGCGTGATTCCGACCAAATCCGCCATTATTCCTGCAGCAGTGGGTGTCGATATCGGCTGT
GGTATGAATGCGGTGCGTACCTCGCTAACTGCCAGCGACTTGCCGGACAGTCTAAGAGCCGTACGCTCAGCGATTGAGAA
GCAAGTGCCGGTTGGCTTTAATATGCACAATCAAATCACAGCCAAAGCCTCAACCCTTGATCCACTCGGCAAGCGATTAA
AGCCAATTACCGATAAGCATCCGGGGCTTTTAAAGATGCTCAAAGGTTTTGAGCGTACGTGGGCGAAGCAGCTGGGTACC
CTTGGCGGTGGTAACCACTTTATCGAGATTTGTCTTGATGAAAACAACGATGTGTGGGTGATGCTGCACTCAGGTAGCCG
AGGTATTGGTAACTGTATTGGCCGCTACTTTATTAATTTGGCCAAAAAAGAGCATCAATCACGCTTTGGTCATGTGCCTG
ACAAAGATTTGTCTTATTTTGCTGAAGGTTCAAGCAGCTTTGATGACTATGTTGAGGCGGTGCAGTGGGCACAGGATTAT
GCGGTGCAAAACCGTAAAGAGATGATGCGTTTGGTATTAGATGCCATGCAGTCGAAGCAGGCAGGATTACCGCCCTTTAC
TTTGACCAAAGAGGCCATTAACTGTCATCACAACTATGTGGAGCAAGAGACGCATTTTGGCGAAAACGTCTATGTCACTC
GCAAAGGTGCTATCAGTGCTTACGAGGGTGAGCTGGGTATTATTCCAGGCTCTATGGGTGCTAAGTCGTTTATCGTGCGT
GGTCTTGGCAACGAAGAGTCGTTTTGCTCATGCTCACATGGGGCAGGGCGTAAGATGAGCCGAACCAAAGCATCTAAAAC
CTTTAGCGTTGAGGAACTAAAAGCACAAACCGCAGGCGTCGAATGCAAAAAAGACAAAAGCGTACTCGATGAAATCCCGG
GTGCGTACAAAGACATCGATGAGGTAATGGATAACCAAAAAGATTTGGTTGAGGTGGTGCATACTTTAAAACAGGTGCTT
TGTGTAAAGGGGTAG

Upstream 100 bases:

>100_bases
AACGCTTAATACAAAAAACATATTCAAAACGAATAAGTTTGGTTGAACAAGTCTATGGTTCTAAACCGCTTATTCGACTA
AAAATAAAGGTAATAACAAA

Downstream 100 bases:

>100_bases
TGATTCGTTATAGTCAGCGAACGACTAAACGGTTACGGTGTTAACCTCGCTAAGCCTACATGTGTAGTACTTACGCTCGG
TTGCCTTGTAACCATTTTAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 403

Protein sequence:

>404_residues
MGLQLILNENSKKGVPVKVYTQDIAQEAIQQLRNMAQLEFVHSHIAVMPDVHVGKGATVGSVIPTKSAIIPAAVGVDIGC
GMNAVRTSLTASDLPDSLRAVRSAIEKQVPVGFNMHNQITAKASTLDPLGKRLKPITDKHPGLLKMLKGFERTWAKQLGT
LGGGNHFIEICLDENNDVWVMLHSGSRGIGNCIGRYFINLAKKEHQSRFGHVPDKDLSYFAEGSSSFDDYVEAVQWAQDY
AVQNRKEMMRLVLDAMQSKQAGLPPFTLTKEAINCHHNYVEQETHFGENVYVTRKGAISAYEGELGIIPGSMGAKSFIVR
GLGNEESFCSCSHGAGRKMSRTKASKTFSVEELKAQTAGVECKKDKSVLDEIPGAYKDIDEVMDNQKDLVEVVHTLKQVL
CVKG

Sequences:

>Translated_404_residues
MGLQLILNENSKKGVPVKVYTQDIAQEAIQQLRNMAQLEFVHSHIAVMPDVHVGKGATVGSVIPTKSAIIPAAVGVDIGC
GMNAVRTSLTASDLPDSLRAVRSAIEKQVPVGFNMHNQITAKASTLDPLGKRLKPITDKHPGLLKMLKGFERTWAKQLGT
LGGGNHFIEICLDENNDVWVMLHSGSRGIGNCIGRYFINLAKKEHQSRFGHVPDKDLSYFAEGSSSFDDYVEAVQWAQDY
AVQNRKEMMRLVLDAMQSKQAGLPPFTLTKEAINCHHNYVEQETHFGENVYVTRKGAISAYEGELGIIPGSMGAKSFIVR
GLGNEESFCSCSHGAGRKMSRTKASKTFSVEELKAQTAGVECKKDKSVLDEIPGAYKDIDEVMDNQKDLVEVVHTLKQVL
CVKG
>Mature_403_residues
GLQLILNENSKKGVPVKVYTQDIAQEAIQQLRNMAQLEFVHSHIAVMPDVHVGKGATVGSVIPTKSAIIPAAVGVDIGCG
MNAVRTSLTASDLPDSLRAVRSAIEKQVPVGFNMHNQITAKASTLDPLGKRLKPITDKHPGLLKMLKGFERTWAKQLGTL
GGGNHFIEICLDENNDVWVMLHSGSRGIGNCIGRYFINLAKKEHQSRFGHVPDKDLSYFAEGSSSFDDYVEAVQWAQDYA
VQNRKEMMRLVLDAMQSKQAGLPPFTLTKEAINCHHNYVEQETHFGENVYVTRKGAISAYEGELGIIPGSMGAKSFIVRG
LGNEESFCSCSHGAGRKMSRTKASKTFSVEELKAQTAGVECKKDKSVLDEIPGAYKDIDEVMDNQKDLVEVVHTLKQVLC
VKG

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=454, Percent_Identity=25.9911894273128, Blast_Score=122, Evalue=4e-28,
Organism=Escherichia coli, GI2367224, Length=418, Percent_Identity=58.6124401913876, Blast_Score=475, Evalue=1e-135,
Organism=Caenorhabditis elegans, GI17506665, Length=427, Percent_Identity=26.6978922716628, Blast_Score=126, Evalue=2e-29,
Organism=Drosophila melanogaster, GI24585217, Length=427, Percent_Identity=25.9953161592506, Blast_Score=115, Evalue=7e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 44241; Mature: 44110

Theoretical pI: Translated: 7.83; Mature: 7.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLQLILNENSKKGVPVKVYTQDIAQEAIQQLRNMAQLEFVHSHIAVMPDVHVGKGATVG
CCEEEEEECCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
SVIPTKSAIIPAAVGVDIGCGMNAVRTSLTASDLPDSLRAVRSAIEKQVPVGFNMHNQIT
CCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCC
AKASTLDPLGKRLKPITDKHPGLLKMLKGFERTWAKQLGTLGGGNHFIEICLDENNDVWV
CCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEEE
MLHSGSRGIGNCIGRYFINLAKKEHQSRFGHVPDKDLSYFAEGSSSFDDYVEAVQWAQDY
EEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
AVQNRKEMMRLVLDAMQSKQAGLPPFTLTKEAINCHHNYVEQETHFGENVYVTRKGAISA
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEE
YEGELGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRKMSRTKASKTFSVEELKAQTAGV
ECCCEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHCCC
ECKKDKSVLDEIPGAYKDIDEVMDNQKDLVEVVHTLKQVLCVKG
CCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GLQLILNENSKKGVPVKVYTQDIAQEAIQQLRNMAQLEFVHSHIAVMPDVHVGKGATVG
CEEEEEECCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
SVIPTKSAIIPAAVGVDIGCGMNAVRTSLTASDLPDSLRAVRSAIEKQVPVGFNMHNQIT
CCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCC
AKASTLDPLGKRLKPITDKHPGLLKMLKGFERTWAKQLGTLGGGNHFIEICLDENNDVWV
CCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEEE
MLHSGSRGIGNCIGRYFINLAKKEHQSRFGHVPDKDLSYFAEGSSSFDDYVEAVQWAQDY
EEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
AVQNRKEMMRLVLDAMQSKQAGLPPFTLTKEAINCHHNYVEQETHFGENVYVTRKGAISA
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEE
YEGELGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRKMSRTKASKTFSVEELKAQTAGV
ECCCEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHCCC
ECKKDKSVLDEIPGAYKDIDEVMDNQKDLVEVVHTLKQVLCVKG
CCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 9738023 [H]