| Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009524 |
| Length | 2,978,976 |
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The map label for this gene is 148652665
Identifier: 148652665
GI number: 148652665
Start: 1012574
End: 1013023
Strand: Direct
Name: 148652665
Synonym: PsycPRwf_0856
Alternate gene names: NA
Gene position: 1012574-1013023 (Clockwise)
Preceding gene: 148652664
Following gene: 148652667
Centisome position: 33.99
GC content: 47.11
Gene sequence:
>450_bases ATGAGCACATCAAATAAAACCAATCCAATGACGCTAATCATCAGTCTATTATCAGGCTCTATCTTCACCGTCGGGCTTAT CGTCTCTGGTATGGTGAATCCAGAGAAGGTGCTTGGGTTCTTGCGCCTATTTCACGGCTGGGATCCGTCGCTAGGTTTGG TGATGGGCGGTGGTATTGCCGTCGCCATGCCAACCTTCTTTTATGTCAAATCACGTATCGCTAAAGGTGAGAGGGCGATA GACAAAGGCAATTTTGATTTACCCACGGCAACCAAGATTACACCGCAACTGGCTATTGGTAGCCTTATCTTTGGTATCGG CTGGGGTATGCTTGGATTTTGTCCTGCACCAGTATTGGTCACTGCATTTGCCGGCTACACAGAGTCGATGATATTTGTGG TCGCGATGCTGGCAGGCTTTTGGTTACATGCGAAATTTATTAAAAGCTAG
Upstream 100 bases:
>100_bases TACTGTTTTTATTTAGCGGTATTGTCACAGCCACTTTATTTGCGATGGTCTGATAAACTTTGCTTAAGCTATCTAATATC CTCTGTATCGAGATAATAAT
Downstream 100 bases:
>100_bases GTGTTAATCTGAATCTATAGGGGCTGGGTATTCCTAATCAAATGGTCATCTATTTTAATTAGTTGCATTGTATCAGTCTA CTTTAGGTGGTTTATTCTCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 149; Mature: 148
Protein sequence:
>149_residues MSTSNKTNPMTLIISLLSGSIFTVGLIVSGMVNPEKVLGFLRLFHGWDPSLGLVMGGGIAVAMPTFFYVKSRIAKGERAI DKGNFDLPTATKITPQLAIGSLIFGIGWGMLGFCPAPVLVTAFAGYTESMIFVVAMLAGFWLHAKFIKS
Sequences:
>Translated_149_residues MSTSNKTNPMTLIISLLSGSIFTVGLIVSGMVNPEKVLGFLRLFHGWDPSLGLVMGGGIAVAMPTFFYVKSRIAKGERAI DKGNFDLPTATKITPQLAIGSLIFGIGWGMLGFCPAPVLVTAFAGYTESMIFVVAMLAGFWLHAKFIKS >Mature_148_residues STSNKTNPMTLIISLLSGSIFTVGLIVSGMVNPEKVLGFLRLFHGWDPSLGLVMGGGIAVAMPTFFYVKSRIAKGERAID KGNFDLPTATKITPQLAIGSLIFGIGWGMLGFCPAPVLVTAFAGYTESMIFVVAMLAGFWLHAKFIKS
Specific function: Unknown
COG id: COG2391
COG function: function code R; Predicted transporter component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0394 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007272 [H]
Pfam domain/function: PF04143 DUF395 [H]
EC number: NA
Molecular weight: Translated: 15905; Mature: 15774
Theoretical pI: Translated: 10.27; Mature: 10.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 5.4 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTSNKTNPMTLIISLLSGSIFTVGLIVSGMVNPEKVLGFLRLFHGWDPSLGLVMGGGIA CCCCCCCCHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEECCCHH VAMPTFFYVKSRIAKGERAIDKGNFDLPTATKITPQLAIGSLIFGIGWGMLGFCPAPVLV HHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHH TAFAGYTESMIFVVAMLAGFWLHAKFIKS HHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure STSNKTNPMTLIISLLSGSIFTVGLIVSGMVNPEKVLGFLRLFHGWDPSLGLVMGGGIA CCCCCCCHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEECCCHH VAMPTFFYVKSRIAKGERAIDKGNFDLPTATKITPQLAIGSLIFGIGWGMLGFCPAPVLV HHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHH TAFAGYTESMIFVVAMLAGFWLHAKFIKS HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 12533478 [H]