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The map label for this gene is yvrC [H]

Identifier: 148652554

GI number: 148652554

Start: 888345

End: 889568

Strand: Direct

Name: yvrC [H]

Synonym: PsycPRwf_0745

Alternate gene names: 148652554

Gene position: 888345-889568 (Clockwise)

Preceding gene: 148652553

Following gene: 148652555

Centisome position: 29.82

GC content: 46.41

Gene sequence:

>1224_bases
ATGAGACAAGCTATTCGTGCCACATTGGCAGCAGCAGTATTAATGGCAACGATGAACTCACAAGCTGAAGTTAAGACCAT
TCATGATGTGTTAGGGCGTGATGTTAAAGTTGACGTGCCAGCCAAAAGAGTCGTGCTAGGGTTTTATTATCCAGATTATA
TTGCAGCAACAGGTGCTGAAAATTTTGGACACGTGGTGGGTATTTCTCGAGAGTTCTGGGAGAGCTTTAACCCAGGAAGC
TGGGCGCTATACAGTCAACAACTGCCCAATCTAAAAAACATTGGTGATATTGGCAATATTGATAGAGGCACATTCTCACT
CGAAAAAACTCTGGCCATGAAGCCGGATGTGGTGGTATTAGCAAAGTGGCAATACGATACGCTAAAGGCTGAAATACCAC
GTTTTGAGGCCGCAAACATTCCTGTGGTAGTGGTGGACTATAATGATCAAAGCGTCGCTAATCACACCAACAGTACCAAG
ATTTTTGGACAAATTGCAGGGACAGAGCAGCGCGCCAATCAAGCGGCACAAGAGTATGCCGATGGCATTGCTGATATCCA
AAAACGGGTCAAAGCGGTAGGGACTGCCAAGCCAAAAATCTATATTGAATTTGGCGATAAAGGCCCACAAGAGCATAGCT
TTACCTTTGGCAAAAATATGTGGGGCGCTATTGCCGATACGGTAGGCGGTGAAAACATCAGTAAGCCTTTTGTTGAGAAT
TGGGGACCCATTAACCCCGAGCAGCTCTTAGTGAGTAAGCCGGACGTGATTATTATCTCAGGTACCGAAGTGGGTATGAA
GCAGACTGATGCTATGGCAATGGGTATTGATATTAGTGCTGATGAGGCTCAGCGCCGGTTAAAAGGGTTTACCACCCGAA
ATGGTTGGGAGAATCTGCCTGCGGTGAAGAACAACCGTGTGTATGGTATCTATCATACCGCTTCTCGCTCGTTGTCTGAC
TTGGCATCGGCTCAGTTTATGGCAAAAACCTTGTACCCTGAAGCCTTTAAAGATGTTGATCCTGAAAAAACCTATACAGA
GTTCCATGAAAAATACCTGCCCGTTAAACCCAGCGGTACGTTTTTTATTCAGCTAGGCTGCGGTGCAAGCCTTTGTAAAG
ACAAGGCATCTGCTGTAGAACAAGCGGCGCCAACAGAGGCAGCGCCTCAGACCCTGTCATGGTGGGATAAGCTGGTCAAT
TGGCTACGTCACTTGTTTACCTGA

Upstream 100 bases:

>100_bases
TGTTGTCTAAAGTCATTATTCCTGGGGCATTATTCCCTGTGGGTATTGTGACCTCTTTTGTGGGCGTGCCTTTTTTATTT
TGGATTATTTGGAGTAAACG

Downstream 100 bases:

>100_bases
TTTTTTGCCATTAACTTTATAAAGATATCATCATGCTTGAACTTGACCAGTTAACCGTGAAGCGTGGCGCACTTACCGTG
GCCCAATCTATCAATGCCCA

Product: periplasmic binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MRQAIRATLAAAVLMATMNSQAEVKTIHDVLGRDVKVDVPAKRVVLGFYYPDYIAATGAENFGHVVGISREFWESFNPGS
WALYSQQLPNLKNIGDIGNIDRGTFSLEKTLAMKPDVVVLAKWQYDTLKAEIPRFEAANIPVVVVDYNDQSVANHTNSTK
IFGQIAGTEQRANQAAQEYADGIADIQKRVKAVGTAKPKIYIEFGDKGPQEHSFTFGKNMWGAIADTVGGENISKPFVEN
WGPINPEQLLVSKPDVIIISGTEVGMKQTDAMAMGIDISADEAQRRLKGFTTRNGWENLPAVKNNRVYGIYHTASRSLSD
LASAQFMAKTLYPEAFKDVDPEKTYTEFHEKYLPVKPSGTFFIQLGCGASLCKDKASAVEQAAPTEAAPQTLSWWDKLVN
WLRHLFT

Sequences:

>Translated_407_residues
MRQAIRATLAAAVLMATMNSQAEVKTIHDVLGRDVKVDVPAKRVVLGFYYPDYIAATGAENFGHVVGISREFWESFNPGS
WALYSQQLPNLKNIGDIGNIDRGTFSLEKTLAMKPDVVVLAKWQYDTLKAEIPRFEAANIPVVVVDYNDQSVANHTNSTK
IFGQIAGTEQRANQAAQEYADGIADIQKRVKAVGTAKPKIYIEFGDKGPQEHSFTFGKNMWGAIADTVGGENISKPFVEN
WGPINPEQLLVSKPDVIIISGTEVGMKQTDAMAMGIDISADEAQRRLKGFTTRNGWENLPAVKNNRVYGIYHTASRSLSD
LASAQFMAKTLYPEAFKDVDPEKTYTEFHEKYLPVKPSGTFFIQLGCGASLCKDKASAVEQAAPTEAAPQTLSWWDKLVN
WLRHLFT
>Mature_407_residues
MRQAIRATLAAAVLMATMNSQAEVKTIHDVLGRDVKVDVPAKRVVLGFYYPDYIAATGAENFGHVVGISREFWESFNPGS
WALYSQQLPNLKNIGDIGNIDRGTFSLEKTLAMKPDVVVLAKWQYDTLKAEIPRFEAANIPVVVVDYNDQSVANHTNSTK
IFGQIAGTEQRANQAAQEYADGIADIQKRVKAVGTAKPKIYIEFGDKGPQEHSFTFGKNMWGAIADTVGGENISKPFVEN
WGPINPEQLLVSKPDVIIISGTEVGMKQTDAMAMGIDISADEAQRRLKGFTTRNGWENLPAVKNNRVYGIYHTASRSLSD
LASAQFMAKTLYPEAFKDVDPEKTYTEFHEKYLPVKPSGTFFIQLGCGASLCKDKASAVEQAAPTEAAPQTLSWWDKLVN
WLRHLFT

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 44959; Mature: 44959

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQAIRATLAAAVLMATMNSQAEVKTIHDVLGRDVKVDVPAKRVVLGFYYPDYIAATGAE
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEECCCCEEEEEEECCHHHHHCCCC
NFGHVVGISREFWESFNPGSWALYSQQLPNLKNIGDIGNIDRGTFSLEKTLAMKPDVVVL
CCCCEEECCHHHHHCCCCCCEEEEHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEE
AKWQYDTLKAEIPRFEAANIPVVVVDYNDQSVANHTNSTKIFGQIAGTEQRANQAAQEYA
EECCCHHHHHHCCCCCCCCCCEEEEECCCCHHHCCCCCCEEEEEECCCHHHHHHHHHHHH
DGIADIQKRVKAVGTAKPKIYIEFGDKGPQEHSFTFGKNMWGAIADTVGGENISKPFVEN
HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEECCCHHHHHHHHHCCCCCCCCCHHHC
WGPINPEQLLVSKPDVIIISGTEVGMKQTDAMAMGIDISADEAQRRLKGFTTRNGWENLP
CCCCCHHHEEECCCCEEEEECCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCC
AVKNNRVYGIYHTASRSLSDLASAQFMAKTLYPEAFKDVDPEKTYTEFHEKYLPVKPSGT
CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCHHHHHCCCCHHHHHHHHHHCCCCCCCCC
FFIQLGCGASLCKDKASAVEQAAPTEAAPQTLSWWDKLVNWLRHLFT
EEEEECCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRQAIRATLAAAVLMATMNSQAEVKTIHDVLGRDVKVDVPAKRVVLGFYYPDYIAATGAE
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEECCCCEEEEEEECCHHHHHCCCC
NFGHVVGISREFWESFNPGSWALYSQQLPNLKNIGDIGNIDRGTFSLEKTLAMKPDVVVL
CCCCEEECCHHHHHCCCCCCEEEEHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEE
AKWQYDTLKAEIPRFEAANIPVVVVDYNDQSVANHTNSTKIFGQIAGTEQRANQAAQEYA
EECCCHHHHHHCCCCCCCCCCEEEEECCCCHHHCCCCCCEEEEEECCCHHHHHHHHHHHH
DGIADIQKRVKAVGTAKPKIYIEFGDKGPQEHSFTFGKNMWGAIADTVGGENISKPFVEN
HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEECCCHHHHHHHHHCCCCCCCCCHHHC
WGPINPEQLLVSKPDVIIISGTEVGMKQTDAMAMGIDISADEAQRRLKGFTTRNGWENLP
CCCCCHHHEEECCCCEEEEECCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCC
AVKNNRVYGIYHTASRSLSDLASAQFMAKTLYPEAFKDVDPEKTYTEFHEKYLPVKPSGT
CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCHHHHHCCCCHHHHHHHHHHCCCCCCCCC
FFIQLGCGASLCKDKASAVEQAAPTEAAPQTLSWWDKLVNWLRHLFT
EEEEECCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]