| Definition | Methanobrevibacter smithii ATCC 35061 chromosome, complete genome. |
|---|---|
| Accession | NC_009515 |
| Length | 1,853,160 |
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The map label for this gene is yfcK [C]
Identifier: 148643615
GI number: 148643615
Start: 1588914
End: 1590137
Strand: Reverse
Name: yfcK [C]
Synonym: Msm_1555
Alternate gene names: 148643615
Gene position: 1590137-1588914 (Counterclockwise)
Preceding gene: 148643625
Following gene: 148643613
Centisome position: 85.81
GC content: 32.35
Gene sequence:
>1224_bases ATGAGTTATGAAAAAAATGCCAGAGTAATCAATGATGATATTTTTGATTTAGTCAACAGCTGTTTTGAAAAAGAAAGAAG TAGTGGAAATATTAATTCAAGATGTAATTTTTTTGATGGAAACAAGGATTATTTTGTTTTAACTGATGACGGATCATATT CCATTAATTCAAAGGAAATAAATCACAAAGTTGAAACACTTCATACATCTACAGGTGCAATAAGTGAATCATTTGAGAAA TTTATCAAACCTATGAAATTCAACTACGATGAAGATCTAGCTATTTTAGATATCTGTGCAGGACTTGGATACAATTCATC TGCTGCAATAGCCGATTTTATTAAAAATAGCTCAGATTCCAGTTTACAAATTGATATGGTTGAAATTTCAAAAGCTACTC TTGCATGCGGTCTTTTAGTTCCCTCACCAATTCCGGAACATGACATTACCAAAAAAGCTATTGAAAATGAATTAATAAAA CAGGATTATGCCGGCATTAGCTATGAAAAATGCAAAATTCCTGAAAATATTGACATCAATGTTTATATTGAAGATGCAAG ACAAACTGTTCAAAATTTGGAAGACAACTATTATGATGCAATATTTTTAGACCCATTCAGTCAAAATATGGCTCCTGAAT TATTTTCTCTGGATTTCTTCAGGGAGTTCAGACGTGTAATTAAAGACAGAGGTATCATAGCTACTTATACTTCTTCTGCA CCAGTCAGGGCAGGTTTTATAGAAGCTGGATTTTATGTTGGTCAGGGACCTATTTTCGGAAGAAAACAGGGAGGAACCCT AGCCAGTCCAAATCCAGAAGTTCTTGATAAATCCCTTCCAAAAAACGATGAAATCAGAATAGCTTTATCTGATGTAGGCA TTCCATTTAGAGACCCTAATCTAAACAACAGCAGTGATTTTATTTTAGATAAACGGGCAGAAGTCAGACATGATGCAAGA CACAACACCAAAATATCCTCTGCTGTCAAAACACCGATTTTTCTAACTAAAAATATGGAAGATGAAAAATTAAAAAGACG TGTTGAGCGTAATTTAGCTAAAATGAACATTCCATCAACTACTTCCAAAGAAGCCTTTTATATTTTAGAATGTGAGGAAA ATTATACTGAAAAACAAGACTTGAAAAACAATTCAAGAACTAGAATACTAGACATGACTGAAAAATTAGAAAAAGTAAAA AATGGAGATTATAATGCCGAATAA
Upstream 100 bases:
>100_bases TTTTTAAAGTATCATATTCTTGTAATGATTTATAAAACCGATTTTTACTTTTTCTAATAGATTTATATTAGTCAAAAATT AATTATTTAAATAGATTAAA
Downstream 100 bases:
>100_bases GGCATTTGTCCATTTTTTAATATGTATGCTTCATCCTTCGATGAACTGACAGTAGAAATAACTTTTATCAGATTTTTAGA ACCGCCACCATGGTTTTTAC
Product: SAM-dependent methyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 407; Mature: 406
Protein sequence:
>407_residues MSYEKNARVINDDIFDLVNSCFEKERSSGNINSRCNFFDGNKDYFVLTDDGSYSINSKEINHKVETLHTSTGAISESFEK FIKPMKFNYDEDLAILDICAGLGYNSSAAIADFIKNSSDSSLQIDMVEISKATLACGLLVPSPIPEHDITKKAIENELIK QDYAGISYEKCKIPENIDINVYIEDARQTVQNLEDNYYDAIFLDPFSQNMAPELFSLDFFREFRRVIKDRGIIATYTSSA PVRAGFIEAGFYVGQGPIFGRKQGGTLASPNPEVLDKSLPKNDEIRIALSDVGIPFRDPNLNNSSDFILDKRAEVRHDAR HNTKISSAVKTPIFLTKNMEDEKLKRRVERNLAKMNIPSTTSKEAFYILECEENYTEKQDLKNNSRTRILDMTEKLEKVK NGDYNAE
Sequences:
>Translated_407_residues MSYEKNARVINDDIFDLVNSCFEKERSSGNINSRCNFFDGNKDYFVLTDDGSYSINSKEINHKVETLHTSTGAISESFEK FIKPMKFNYDEDLAILDICAGLGYNSSAAIADFIKNSSDSSLQIDMVEISKATLACGLLVPSPIPEHDITKKAIENELIK QDYAGISYEKCKIPENIDINVYIEDARQTVQNLEDNYYDAIFLDPFSQNMAPELFSLDFFREFRRVIKDRGIIATYTSSA PVRAGFIEAGFYVGQGPIFGRKQGGTLASPNPEVLDKSLPKNDEIRIALSDVGIPFRDPNLNNSSDFILDKRAEVRHDAR HNTKISSAVKTPIFLTKNMEDEKLKRRVERNLAKMNIPSTTSKEAFYILECEENYTEKQDLKNNSRTRILDMTEKLEKVK NGDYNAE >Mature_406_residues SYEKNARVINDDIFDLVNSCFEKERSSGNINSRCNFFDGNKDYFVLTDDGSYSINSKEINHKVETLHTSTGAISESFEKF IKPMKFNYDEDLAILDICAGLGYNSSAAIADFIKNSSDSSLQIDMVEISKATLACGLLVPSPIPEHDITKKAIENELIKQ DYAGISYEKCKIPENIDINVYIEDARQTVQNLEDNYYDAIFLDPFSQNMAPELFSLDFFREFRRVIKDRGIIATYTSSAP VRAGFIEAGFYVGQGPIFGRKQGGTLASPNPEVLDKSLPKNDEIRIALSDVGIPFRDPNLNNSSDFILDKRAEVRHDARH NTKISSAVKTPIFLTKNMEDEKLKRRVERNLAKMNIPSTTSKEAFYILECEENYTEKQDLKNNSRTRILDMTEKLEKVKN GDYNAE
Specific function: Unknown
COG id: COG4121
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008471 [H]
Pfam domain/function: PF05430 DUF752 [H]
EC number: NA
Molecular weight: Translated: 46137; Mature: 46006
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYEKNARVINDDIFDLVNSCFEKERSSGNINSRCNFFDGNKDYFVLTDDGSYSINSKEI CCCCCCCEEECHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCEEEEECCCCEEECHHHH NHKVETLHTSTGAISESFEKFIKPMKFNYDEDLAILDICAGLGYNSSAAIADFIKNSSDS HHHHHHEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHCCCCC SLQIDMVEISKATLACGLLVPSPIPEHDITKKAIENELIKQDYAGISYEKCKIPENIDIN CEEEEEEEHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEE VYIEDARQTVQNLEDNYYDAIFLDPFSQNMAPELFSLDFFREFRRVIKDRGIIATYTSSA EEEHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCC PVRAGFIEAGFYVGQGPIFGRKQGGTLASPNPEVLDKSLPKNDEIRIALSDVGIPFRDPN CCEEEEEECCEEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCCCCCC LNNSSDFILDKRAEVRHDARHNTKISSAVKTPIFLTKNMEDEKLKRRVERNLAKMNIPST CCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCC TSKEAFYILECEENYTEKQDLKNNSRTRILDMTEKLEKVKNGDYNAE CCCCEEEEEECCCCCCHHHHHCCCCCEEEEHHHHHHHHHHCCCCCCC >Mature Secondary Structure SYEKNARVINDDIFDLVNSCFEKERSSGNINSRCNFFDGNKDYFVLTDDGSYSINSKEI CCCCCCEEECHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCEEEEECCCCEEECHHHH NHKVETLHTSTGAISESFEKFIKPMKFNYDEDLAILDICAGLGYNSSAAIADFIKNSSDS HHHHHHEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHCCCCC SLQIDMVEISKATLACGLLVPSPIPEHDITKKAIENELIKQDYAGISYEKCKIPENIDIN CEEEEEEEHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEE VYIEDARQTVQNLEDNYYDAIFLDPFSQNMAPELFSLDFFREFRRVIKDRGIIATYTSSA EEEHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCC PVRAGFIEAGFYVGQGPIFGRKQGGTLASPNPEVLDKSLPKNDEIRIALSDVGIPFRDPN CCEEEEEECCEEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCCCCCC LNNSSDFILDKRAEVRHDARHNTKISSAVKTPIFLTKNMEDEKLKRRVERNLAKMNIPST CCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCC TSKEAFYILECEENYTEKQDLKNNSRTRILDMTEKLEKVKNGDYNAE CCCCEEEEEECCCCCCHHHHHCCCCCEEEEHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]