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The map label for this gene is lysS [H]

Identifier: 148643447

GI number: 148643447

Start: 1406540

End: 1408123

Strand: Reverse

Name: lysS [H]

Synonym: Msm_1387

Alternate gene names: 148643447

Gene position: 1408123-1406540 (Counterclockwise)

Preceding gene: 148643448

Following gene: 148643444

Centisome position: 75.98

GC content: 33.9

Gene sequence:

>1584_bases
ATGAAACATTGGATTGAAAATATAGCTGAGGAATTAAGTAAAAGAGATACTGATAAACATGTAATTGCAAGTGGAACCTC
AATATCAGGTTCTATCCATATTGGAAACTCCTGTGATGTATTTATAGCTAATGCAATCGGAAAAAAATTACGTGAATTGG
GAAAAGAAGCTCAAACTATTTGGATTGCTGATGACCATGACCCACTTAGAAAAGTTCCATACCCATTACCTGAAAATTAC
GATAAATATCTTGGAATGCCTTACTCAACAATTCCATGTCCTGACGGCTGTTGTGATAACTTTGTAGAACACTTTGAAAA
ACCATTTTTAGGAGTTATGGATGCATACGGTATTGAAATAGAACATAAATCCGGATTTGAAATGTATAAAAGCGGAGTCT
ACAATGACTACATAAGAACAGCTCTGGAAAATGTAGACAGAATCAAGGAAATATTCAATCAATACAGAAGAGAACCTCTA
GCAGATGACTGGTTACCATACAATCCAATTTGTGAAGAATGTGGAAGGGTAAATACCACTTATGCATATGATTTTGATGG
AGACATCATCAAATACAGATGTGACTGCGGTCATGAAGGTGAAATGAACATTAAATCCGGAAATGGTAAACTTACATGGA
GAGTGGAATGGGCTGCAAGATGGAAAATATTTAACGTTACCTGCGAACCATTCGGAAAAGACCATGCAGCAAGTGGAGGA
TCATATGATGTAAGTAGCATTATTTCAAAAGAAATATTTGACTACGAAGCACCATACCCAGTTCCTTATGAATGGATTAC
TTTAGACGGAGAAGCTATGAGTAAATCTCATGGAGTATTTTTCAGCCCGGAACAATGGTTAGCTATCGGTCCTGCTGAAA
GTCTTAACTACTACTTATTCAGAAGCAAACCTATGAAAGCTAAAGATTTCTCACCTAAAATGTCATTTTTAGACTTCATG
GATCAATTTGACAAAGTAGAAAAAGTATTCTACAATGAAGAAGAAGCACCATCTGAAAAAGAAGGTAAAAAATTCAAAAA
AATCTATGAAATAGCTCAAATAAATGAAGGCAGTCCTCTACCATTCAGACCGCCTTACAGATTCTTAGTTAATGCTTACC
AAATAGCTGGAAACAATTTAGAAAAAATATTTACAATTCTTAAAAACAATTCCCAATTAACTAAAAGCTTTAAAAACAAA
GAATTCTGTGATTTGAATGAAACAGAATTAAAACAATTCCAGGAACGTGTTGACAATGTTGTTAACTGGTTAGATACTTA
TGCCCCTAAATTTGTAAAATTCCAAGTTCAGGAAAAAAGTGTTCCAAAATTACCATTAACTGACGAACAGACAGAATTCT
TAGGCAAATTAGCTGATTTAATGGAATCAAAAGAATTTAACAAAGCTGAAGATTTACACGATGCAATGTACGAAATTCTT
GAAGGTCAAGGATTAAAACCTCAAAAAGGATTCCAAGCTATTTATAAAATGATTTTAGGTCAAAAACAAGGGCCAAGAGC
AGCATCATTCTTATTATCTCTTGACAAAGACTTTGTTGTTAAAAGATTAAGACAGGAAGCTTAA

Upstream 100 bases:

>100_bases
TTCACAATAATGTAACATTTTTACTTAATCTTTTTATATTAATAACAAGAAATATTAAATGTATAACTTATTTTTATGAT
TATAAATTATCGGTGATGTA

Downstream 100 bases:

>100_bases
AAATCACAAACATCAGTAGAATTCCCTACTTTGGATAATTCATTATTCCAAGATTCAGGGTTTTCTTCCACATATTTTTC
AAACAATTTTTTACATTCCA

Product: lysyl-tRNA synthetase (class I), LysS

Products: NA

Alternate protein names: Lysine--tRNA ligase; LysRS [H]

Number of amino acids: Translated: 527; Mature: 527

Protein sequence:

>527_residues
MKHWIENIAEELSKRDTDKHVIASGTSISGSIHIGNSCDVFIANAIGKKLRELGKEAQTIWIADDHDPLRKVPYPLPENY
DKYLGMPYSTIPCPDGCCDNFVEHFEKPFLGVMDAYGIEIEHKSGFEMYKSGVYNDYIRTALENVDRIKEIFNQYRREPL
ADDWLPYNPICEECGRVNTTYAYDFDGDIIKYRCDCGHEGEMNIKSGNGKLTWRVEWAARWKIFNVTCEPFGKDHAASGG
SYDVSSIISKEIFDYEAPYPVPYEWITLDGEAMSKSHGVFFSPEQWLAIGPAESLNYYLFRSKPMKAKDFSPKMSFLDFM
DQFDKVEKVFYNEEEAPSEKEGKKFKKIYEIAQINEGSPLPFRPPYRFLVNAYQIAGNNLEKIFTILKNNSQLTKSFKNK
EFCDLNETELKQFQERVDNVVNWLDTYAPKFVKFQVQEKSVPKLPLTDEQTEFLGKLADLMESKEFNKAEDLHDAMYEIL
EGQGLKPQKGFQAIYKMILGQKQGPRAASFLLSLDKDFVVKRLRQEA

Sequences:

>Translated_527_residues
MKHWIENIAEELSKRDTDKHVIASGTSISGSIHIGNSCDVFIANAIGKKLRELGKEAQTIWIADDHDPLRKVPYPLPENY
DKYLGMPYSTIPCPDGCCDNFVEHFEKPFLGVMDAYGIEIEHKSGFEMYKSGVYNDYIRTALENVDRIKEIFNQYRREPL
ADDWLPYNPICEECGRVNTTYAYDFDGDIIKYRCDCGHEGEMNIKSGNGKLTWRVEWAARWKIFNVTCEPFGKDHAASGG
SYDVSSIISKEIFDYEAPYPVPYEWITLDGEAMSKSHGVFFSPEQWLAIGPAESLNYYLFRSKPMKAKDFSPKMSFLDFM
DQFDKVEKVFYNEEEAPSEKEGKKFKKIYEIAQINEGSPLPFRPPYRFLVNAYQIAGNNLEKIFTILKNNSQLTKSFKNK
EFCDLNETELKQFQERVDNVVNWLDTYAPKFVKFQVQEKSVPKLPLTDEQTEFLGKLADLMESKEFNKAEDLHDAMYEIL
EGQGLKPQKGFQAIYKMILGQKQGPRAASFLLSLDKDFVVKRLRQEA
>Mature_527_residues
MKHWIENIAEELSKRDTDKHVIASGTSISGSIHIGNSCDVFIANAIGKKLRELGKEAQTIWIADDHDPLRKVPYPLPENY
DKYLGMPYSTIPCPDGCCDNFVEHFEKPFLGVMDAYGIEIEHKSGFEMYKSGVYNDYIRTALENVDRIKEIFNQYRREPL
ADDWLPYNPICEECGRVNTTYAYDFDGDIIKYRCDCGHEGEMNIKSGNGKLTWRVEWAARWKIFNVTCEPFGKDHAASGG
SYDVSSIISKEIFDYEAPYPVPYEWITLDGEAMSKSHGVFFSPEQWLAIGPAESLNYYLFRSKPMKAKDFSPKMSFLDFM
DQFDKVEKVFYNEEEAPSEKEGKKFKKIYEIAQINEGSPLPFRPPYRFLVNAYQIAGNNLEKIFTILKNNSQLTKSFKNK
EFCDLNETELKQFQERVDNVVNWLDTYAPKFVKFQVQEKSVPKLPLTDEQTEFLGKLADLMESKEFNKAEDLHDAMYEIL
EGQGLKPQKGFQAIYKMILGQKQGPRAASFLLSLDKDFVVKRLRQEA

Specific function: Unknown

COG id: COG1384

COG function: function code J; Lysyl-tRNA synthetase (class I)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008925
- InterPro:   IPR020751
- InterPro:   IPR002904
- InterPro:   IPR020754
- InterPro:   IPR020756
- InterPro:   IPR014729 [H]

Pfam domain/function: PF01921 tRNA-synt_1f [H]

EC number: =6.1.1.6 [H]

Molecular weight: Translated: 60816; Mature: 60816

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHWIENIAEELSKRDTDKHVIASGTSISGSIHIGNSCDVFIANAIGKKLRELGKEAQTI
CHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEE
WIADDHDPLRKVPYPLPENYDKYLGMPYSTIPCPDGCCDNFVEHFEKPFLGVMDAYGIEI
EEECCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCEEE
EHKSGFEMYKSGVYNDYIRTALENVDRIKEIFNQYRREPLADDWLPYNPICEECGRVNTT
ECCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCE
YAYDFDGDIIKYRCDCGHEGEMNIKSGNGKLTWRVEWAARWKIFNVTCEPFGKDHAASGG
EEEECCCCEEEEEECCCCCCCEEEECCCCEEEEEEEEEEEEEEEEEEECCCCCCCCCCCC
SYDVSSIISKEIFDYEAPYPVPYEWITLDGEAMSKSHGVFFSPEQWLAIGPAESLNYYLF
CCCHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHCCCCEEECCCCEEEECCHHHCCEEEE
RSKPMKAKDFSPKMSFLDFMDQFDKVEKVFYNEEEAPSEKEGKKFKKIYEIAQINEGSPL
ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
PFRPPYRFLVNAYQIAGNNLEKIFTILKNNSQLTKSFKNKEFCDLNETELKQFQERVDNV
CCCCCHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
VNWLDTYAPKFVKFQVQEKSVPKLPLTDEQTEFLGKLADLMESKEFNKAEDLHDAMYEIL
HHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
EGQGLKPQKGFQAIYKMILGQKQGPRAASFLLSLDKDFVVKRLRQEA
CCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHCC
>Mature Secondary Structure
MKHWIENIAEELSKRDTDKHVIASGTSISGSIHIGNSCDVFIANAIGKKLRELGKEAQTI
CHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEE
WIADDHDPLRKVPYPLPENYDKYLGMPYSTIPCPDGCCDNFVEHFEKPFLGVMDAYGIEI
EEECCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCEEE
EHKSGFEMYKSGVYNDYIRTALENVDRIKEIFNQYRREPLADDWLPYNPICEECGRVNTT
ECCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCE
YAYDFDGDIIKYRCDCGHEGEMNIKSGNGKLTWRVEWAARWKIFNVTCEPFGKDHAASGG
EEEECCCCEEEEEECCCCCCCEEEECCCCEEEEEEEEEEEEEEEEEEECCCCCCCCCCCC
SYDVSSIISKEIFDYEAPYPVPYEWITLDGEAMSKSHGVFFSPEQWLAIGPAESLNYYLF
CCCHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHCCCCEEECCCCEEEECCHHHCCEEEE
RSKPMKAKDFSPKMSFLDFMDQFDKVEKVFYNEEEAPSEKEGKKFKKIYEIAQINEGSPL
ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
PFRPPYRFLVNAYQIAGNNLEKIFTILKNNSQLTKSFKNKEFCDLNETELKQFQERVDNV
CCCCCHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
VNWLDTYAPKFVKFQVQEKSVPKLPLTDEQTEFLGKLADLMESKEFNKAEDLHDAMYEIL
HHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
EGQGLKPQKGFQAIYKMILGQKQGPRAASFLLSLDKDFVVKRLRQEA
CCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]