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The map label for this gene is rpoM [H]

Identifier: 148643414

GI number: 148643414

Start: 1379135

End: 1379449

Strand: Reverse

Name: rpoM [H]

Synonym: Msm_1354

Alternate gene names: 148643414

Gene position: 1379449-1379135 (Counterclockwise)

Preceding gene: 148643415

Following gene: 148643413

Centisome position: 74.44

GC content: 32.7

Gene sequence:

>315_bases
ATGGAATTTTGTCCTGAATGTGGATCAATGTTACTTCCAACAGAAGACAATGAATTAAAATGTAGTTGCGGATATACTAA
AAAATTATCAAAAGATAAATCAGAATATAATGTTAATGAAAAAATTAAAGAAAATGATAGTGTTATTGAAAAAGGAGAAG
ATGTAAATACACTTCCAACTACAAAAGCGGTTTGTCCAGAATGTGGTCACACAGAAGCTTCATGGTGGTTACAACAAACC
CGTAGTGCTGATGAAGCTGAAACACGTTTCTTTAAGTGTCTTAAATGTGGACACACATGGAGAGAATACGATTAA

Upstream 100 bases:

>100_bases
TTAATGTTAAAAAATAGTAAAAATATAAATAACTTGAGAATATAATTTAAAATGTTATAAAAGTTTTGATAAGAAAAAAT
TATATAAGGGGTTAAAAAAT

Downstream 100 bases:

>100_bases
GAGGATAGTTTATGAAAAAATCTAAAGAAAATGAGCATAGGATTTCTAATTTAAAGGATATGCTAAATAATGTCAAAGAT
GAAGATATAAACGAATCTGC

Product: DNA-directed RNA polymerase subunit M, RpoM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 104; Mature: 104

Protein sequence:

>104_residues
MEFCPECGSMLLPTEDNELKCSCGYTKKLSKDKSEYNVNEKIKENDSVIEKGEDVNTLPTTKAVCPECGHTEASWWLQQT
RSADEAETRFFKCLKCGHTWREYD

Sequences:

>Translated_104_residues
MEFCPECGSMLLPTEDNELKCSCGYTKKLSKDKSEYNVNEKIKENDSVIEKGEDVNTLPTTKAVCPECGHTEASWWLQQT
RSADEAETRFFKCLKCGHTWREYD
>Mature_104_residues
MEFCPECGSMLLPTEDNELKCSCGYTKKLSKDKSEYNVNEKIKENDSVIEKGEDVNTLPTTKAVCPECGHTEASWWLQQT
RSADEAETRFFKCLKCGHTWREYD

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates [H]

COG id: COG1594

COG function: function code K; DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TFIIS-type zinc finger [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6320250, Length=110, Percent_Identity=37.2727272727273, Blast_Score=60, Evalue=7e-11,
Organism=Drosophila melanogaster, GI78707272, Length=108, Percent_Identity=37.962962962963, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019761
- InterPro:   IPR001529
- InterPro:   IPR006288
- InterPro:   IPR001222 [H]

Pfam domain/function: PF02150 RNA_POL_M_15KD; PF01096 TFIIS_C [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 11965; Mature: 11965

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: PS00466 ZF_TFIIS_1 ; PS51133 ZF_TFIIS_2 ; PS01030 RNA_POL_M_15KD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
9.6 %Cys+Met (Translated Protein)
7.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
9.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFCPECGSMLLPTEDNELKCSCGYTKKLSKDKSEYNVNEKIKENDSVIEKGEDVNTLPT
CCCCCCCCCEECCCCCCCEEECCCCCHHHHCCCCCCCCCHHHHCCCHHHHCCCCCCCCCC
TKAVCPECGHTEASWWLQQTRSADEAETRFFKCLKCGHTWREYD
CCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MEFCPECGSMLLPTEDNELKCSCGYTKKLSKDKSEYNVNEKIKENDSVIEKGEDVNTLPT
CCCCCCCCCEECCCCCCCEEECCCCCHHHHCCCCCCCCCHHHHCCCHHHHCCCCCCCCCC
TKAVCPECGHTEASWWLQQTRSADEAETRFFKCLKCGHTWREYD
CCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]