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The map label for this gene is hmfB [H]

Identifier: 148643320

GI number: 148643320

Start: 1265760

End: 1265969

Strand: Reverse

Name: hmfB [H]

Synonym: Msm_1260

Alternate gene names: 148643320

Gene position: 1265969-1265760 (Counterclockwise)

Preceding gene: 148643324

Following gene: 148643319

Centisome position: 68.31

GC content: 32.86

Gene sequence:

>210_bases
ATGTCTGAAATACCAAAAGCTCCTATCGCAAGGATTATTAAAGATACTGGTGCTGAAAGAGTTAGTGAAGATGCTAAAGC
TGAATTAGCTGAATATCTTGAAGAAGTAGCTCGTGACGTTGCAATTGAAGCAAACAATGTTGCTAAAATCGCTAAACGTA
AAACTATCAAACCAGAAGATATTAAATTAGCTATTAAAAATTTAGAATAG

Upstream 100 bases:

>100_bases
ATACAAAATCTTTAAATATAATAGAAATTATATTGATATTAAGCTTAAGATTAATTTAAAATTATCATAAGTTATAAATC
AACTGTTTGAGGTGAAATAC

Downstream 100 bases:

>100_bases
TTATTTTAATTGACTTTTTTTTATTTTTTTTAGGTGTTATTATGACTGATAATACTATTTTAATTAAAGATGCATTAATT
TTAAACCCTTTAGATTTTAA

Product: histone

Products: NA

Alternate protein names: Archaeal histone B [H]

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MSEIPKAPIARIIKDTGAERVSEDAKAELAEYLEEVARDVAIEANNVAKIAKRKTIKPEDIKLAIKNLE

Sequences:

>Translated_69_residues
MSEIPKAPIARIIKDTGAERVSEDAKAELAEYLEEVARDVAIEANNVAKIAKRKTIKPEDIKLAIKNLE
>Mature_68_residues
SEIPKAPIARIIKDTGAERVSEDAKAELAEYLEEVARDVAIEANNVAKIAKRKTIKPEDIKLAIKNLE

Specific function: Binds and compact DNA (95 to 150 base pairs) to form nucleosome-like structures that contain positive DNA supercoils. Increases the resistance of DNA to thermal denaturation [H]

COG id: COG2036

COG function: function code B; Histones H3 and H4

Gene ontology:

Cell location: Cytoplasm (Potential). Chromosome (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal histone HMF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003958
- InterPro:   IPR009072 [H]

Pfam domain/function: PF00808 CBFD_NFYB_HMF [H]

EC number: NA

Molecular weight: Translated: 7630; Mature: 7499

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEIPKAPIARIIKDTGAERVSEDAKAELAEYLEEVARDVAIEANNVAKIAKRKTIKPED
CCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCH
IKLAIKNLE
HHHHHCCCC
>Mature Secondary Structure 
SEIPKAPIARIIKDTGAERVSEDAKAELAEYLEEVARDVAIEANNVAKIAKRKTIKPED
CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCH
IKLAIKNLE
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2377617; 7809089; 8820495; 8568866; 11021968 [H]