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The map label for this gene is ybhR [H]

Identifier: 148643308

GI number: 148643308

Start: 1252784

End: 1254001

Strand: Reverse

Name: ybhR [H]

Synonym: Msm_1248

Alternate gene names: 148643308

Gene position: 1254001-1252784 (Counterclockwise)

Preceding gene: 148643309

Following gene: 148643307

Centisome position: 67.67

GC content: 32.43

Gene sequence:

>1218_bases
ATGATAGAGCTTAGAAAATTTAGCTGGATGATTAAGAAAGAACTTTTAAGTTTAAAAAGACATCCTCCAAGGTTAATTTC
AATTTTAATTTTTCCTATTATCATGATTTTGTTATTTGGTTATGGTATGGGTGGAGACATGACTGATTTGCCTGTAGTTG
TTGTTTCTCAAAGCCACGGTGACTTAACTGATGTAACATTGGATACTATTAAAACAACGGATCAGTATAATGTAGTAGAG
GTTATGGATGATGTTGATGATGCAAAAGAGAGAGTTGATAGTGGAGAAGTAAAAGCTGCAATTATACTGCCGGAAAATTA
TGACAGTAATGTGTCTCAAAAGGCGGTTACACTGTATTTGGATTCATCTGATCAAATGGCTTCTTCAACATTGGAAAGTG
TAACTCAGGGAATATTTGCTAAATTATCAAATATGGAAGCATCTAATGCCATAGTTTCTAATCCTTCATCACAGGAATTA
GAAAATAGTACCAGTCCTCTAAATCAATCTGAATTAGCTACTAATACTCAAAGTGCAAATGTTACAAATTCAATTGGACA
TACATTTGATAATTTTAAGGATGATATTGCACTCCATATTAACAAAATATATGGAAATATTAAGTATATTGACTTTTTAG
TTCCTGCAGTTTTAGGAATGACTGTAATGATGTCCTGTATGATGGGTATGGGTGCATCAATAGCTGGAGAACGTGAAACT
GGTGAATTAGCTAGATTATTTATGACTCCGACATCAATTTCAACTGTAGTTGGAGGTAAAATTGCATCTAAACTTATTGT
TGAGTTAGTTAGGGCTCTTATATTAATATTCATGGCTATTGTATTGTTTAATGTAAGTATTAAAGGAGGAATCTTACAAA
CATTCATTGTTCTTTTCTTTGGAGCACTATGTTTTGTTGGTTTTGGTATCATGTTGTCTGCAAGAACCAACACTCAGGAA
GATTATACTCAAATAGTCATGCCATTTTCAATGCCTATGATGTTTGTTTCTGGTGTATTCTATCCTATTGAAACTATGCC
TTGGATTTTACAAAAAATAGCTTATATATTCCCATTAACTTATCTTAACGATGCAATGAGGGGAGTAATGATTAAAGGTC
AAAGTTTAGGCGATGTATGGTTAGATTTAGCTATACTTTTAGGATTCACTGCACTGTTCTTTATCATTGGAGTCAAAAGA
TTTAATAGAGATATTTAA

Upstream 100 bases:

>100_bases
AAAGACATTATTGAAGCAGGCGGAGTTGTCAAATCAATATTTACACAGGAACCATCTCTGGAAGATGTATTTATTAAAGC
AACAGCTGAGGTGAATGAAG

Downstream 100 bases:

>100_bases
GGAGGCTAAAAGATGTCTAAATATAATAAATTATTAATCGGATTTATAATCTGTATATTATGTATCAGCCCGATAGCTGG
TGCAAATATTGATTGGAACA

Product: multidrug ABC transporter, permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 405

Protein sequence:

>405_residues
MIELRKFSWMIKKELLSLKRHPPRLISILIFPIIMILLFGYGMGGDMTDLPVVVVSQSHGDLTDVTLDTIKTTDQYNVVE
VMDDVDDAKERVDSGEVKAAIILPENYDSNVSQKAVTLYLDSSDQMASSTLESVTQGIFAKLSNMEASNAIVSNPSSQEL
ENSTSPLNQSELATNTQSANVTNSIGHTFDNFKDDIALHINKIYGNIKYIDFLVPAVLGMTVMMSCMMGMGASIAGERET
GELARLFMTPTSISTVVGGKIASKLIVELVRALILIFMAIVLFNVSIKGGILQTFIVLFFGALCFVGFGIMLSARTNTQE
DYTQIVMPFSMPMMFVSGVFYPIETMPWILQKIAYIFPLTYLNDAMRGVMIKGQSLGDVWLDLAILLGFTALFFIIGVKR
FNRDI

Sequences:

>Translated_405_residues
MIELRKFSWMIKKELLSLKRHPPRLISILIFPIIMILLFGYGMGGDMTDLPVVVVSQSHGDLTDVTLDTIKTTDQYNVVE
VMDDVDDAKERVDSGEVKAAIILPENYDSNVSQKAVTLYLDSSDQMASSTLESVTQGIFAKLSNMEASNAIVSNPSSQEL
ENSTSPLNQSELATNTQSANVTNSIGHTFDNFKDDIALHINKIYGNIKYIDFLVPAVLGMTVMMSCMMGMGASIAGERET
GELARLFMTPTSISTVVGGKIASKLIVELVRALILIFMAIVLFNVSIKGGILQTFIVLFFGALCFVGFGIMLSARTNTQE
DYTQIVMPFSMPMMFVSGVFYPIETMPWILQKIAYIFPLTYLNDAMRGVMIKGQSLGDVWLDLAILLGFTALFFIIGVKR
FNRDI
>Mature_405_residues
MIELRKFSWMIKKELLSLKRHPPRLISILIFPIIMILLFGYGMGGDMTDLPVVVVSQSHGDLTDVTLDTIKTTDQYNVVE
VMDDVDDAKERVDSGEVKAAIILPENYDSNVSQKAVTLYLDSSDQMASSTLESVTQGIFAKLSNMEASNAIVSNPSSQEL
ENSTSPLNQSELATNTQSANVTNSIGHTFDNFKDDIALHINKIYGNIKYIDFLVPAVLGMTVMMSCMMGMGASIAGERET
GELARLFMTPTSISTVVGGKIASKLIVELVRALILIFMAIVLFNVSIKGGILQTFIVLFFGALCFVGFGIMLSARTNTQE
DYTQIVMPFSMPMMFVSGVFYPIETMPWILQKIAYIFPLTYLNDAMRGVMIKGQSLGDVWLDLAILLGFTALFFIIGVKR
FNRDI

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1787010, Length=385, Percent_Identity=24.1558441558442, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI48994943, Length=386, Percent_Identity=20.2072538860104, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787011, Length=384, Percent_Identity=17.96875, Blast_Score=69, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24650855, Length=422, Percent_Identity=22.9857819905213, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24650853, Length=422, Percent_Identity=22.9857819905213, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI85725260, Length=386, Percent_Identity=20.7253886010363, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI85725262, Length=390, Percent_Identity=21.2820512820513, Blast_Score=86, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24582014, Length=412, Percent_Identity=22.5728155339806, Blast_Score=82, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24582012, Length=412, Percent_Identity=22.5728155339806, Blast_Score=82, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 44743; Mature: 44743

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.9 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIELRKFSWMIKKELLSLKRHPPRLISILIFPIIMILLFGYGMGGDMTDLPVVVVSQSHG
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCC
DLTDVTLDTIKTTDQYNVVEVMDDVDDAKERVDSGEVKAAIILPENYDSNVSQKAVTLYL
CCHHEEHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCEEEEEE
DSSDQMASSTLESVTQGIFAKLSNMEASNAIVSNPSSQELENSTSPLNQSELATNTQSAN
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCHHHHHCCCCCCCHHHHHCCCCCCC
VTNSIGHTFDNFKDDIALHINKIYGNIKYIDFLVPAVLGMTVMMSCMMGMGASIAGERET
CCHHHHCHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
GELARLFMTPTSISTVVGGKIASKLIVELVRALILIFMAIVLFNVSIKGGILQTFIVLFF
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
GALCFVGFGIMLSARTNTQEDYTQIVMPFSMPMMFVSGVFYPIETMPWILQKIAYIFPLT
HHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
YLNDAMRGVMIKGQSLGDVWLDLAILLGFTALFFIIGVKRFNRDI
HHHHHHHCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MIELRKFSWMIKKELLSLKRHPPRLISILIFPIIMILLFGYGMGGDMTDLPVVVVSQSHG
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCC
DLTDVTLDTIKTTDQYNVVEVMDDVDDAKERVDSGEVKAAIILPENYDSNVSQKAVTLYL
CCHHEEHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCEEEEEE
DSSDQMASSTLESVTQGIFAKLSNMEASNAIVSNPSSQELENSTSPLNQSELATNTQSAN
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCHHHHHCCCCCCCHHHHHCCCCCCC
VTNSIGHTFDNFKDDIALHINKIYGNIKYIDFLVPAVLGMTVMMSCMMGMGASIAGERET
CCHHHHCHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
GELARLFMTPTSISTVVGGKIASKLIVELVRALILIFMAIVLFNVSIKGGILQTFIVLFF
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
GALCFVGFGIMLSARTNTQEDYTQIVMPFSMPMMFVSGVFYPIETMPWILQKIAYIFPLT
HHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
YLNDAMRGVMIKGQSLGDVWLDLAILLGFTALFFIIGVKRFNRDI
HHHHHHHCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]