Click here to switch to the map view.

The map label for this gene is 148642992

Identifier: 148642992

GI number: 148642992

Start: 893670

End: 894212

Strand: Reverse

Name: 148642992

Synonym: Msm_0932

Alternate gene names: NA

Gene position: 894212-893670 (Counterclockwise)

Preceding gene: 148642993

Following gene: 148642990

Centisome position: 48.25

GC content: 34.62

Gene sequence:

>543_bases
ATGATGAATGTAAATGTTTTAAGATTGGACCATAGAATTGGAAGAGATACACGTATAACCACTCATGTATGTTTGACTTC
TAGAGCTTTTGGAGCTAGTAAAATCTATTTAAGTGGTGAAGAAGACCATAAACTTATGGAAAATGTTAGAGACACTGCTG
ATAGGTGGGGAGGAAATTTTGAAATTGAATATGCTAAAAATTATATGGGTGTTATTAACAAATGGAAAGACAATGGTGGA
AAAGTAGTTCACTTAACAATGTATGGCTCTCAGGCTCATGAAATTGTTAGTGAAGTTCAGAAATCCAGTGCTGACATTTT
GATTGTTGTTGGTGGGGCTAAAGTTCCTGGAAAAGTATATAAAAGTGCCGATTGGAATGTTTCAGTAACTACACAACCTC
ACTCTGAAGTTTCTTCTCTTGCTGTTTTCCAGCATTTGCTTATGGACGGTAAGGAATTTGATTTGGAGTTTGAAAATCCT
GTATTTGAAGTTATTCCAACAGCGCATGGTAAAAATGTTAATATTCATGATGAAAACAGATAA

Upstream 100 bases:

>100_bases
TGTTATAGCTAATGGTGATGTTTTGGGAATGTCTAATGAAGTTGGAAGGCTGATGGCATTGTTATTTATGTCAGTGGCTT
TGTTCTTTTTATGAAGTGAT

Downstream 100 bases:

>100_bases
TATTAGCTAATAAAGTCATCTAACCTTTTGATGGCTTTAATTTTTTCATCTTTTTTTAATTTGGCTTGGTCAATAGCATC
TCTCATTGTGTTTATTGAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MMNVNVLRLDHRIGRDTRITTHVCLTSRAFGASKIYLSGEEDHKLMENVRDTADRWGGNFEIEYAKNYMGVINKWKDNGG
KVVHLTMYGSQAHEIVSEVQKSSADILIVVGGAKVPGKVYKSADWNVSVTTQPHSEVSSLAVFQHLLMDGKEFDLEFENP
VFEVIPTAHGKNVNIHDENR

Sequences:

>Translated_180_residues
MMNVNVLRLDHRIGRDTRITTHVCLTSRAFGASKIYLSGEEDHKLMENVRDTADRWGGNFEIEYAKNYMGVINKWKDNGG
KVVHLTMYGSQAHEIVSEVQKSSADILIVVGGAKVPGKVYKSADWNVSVTTQPHSEVSSLAVFQHLLMDGKEFDLEFENP
VFEVIPTAHGKNVNIHDENR
>Mature_180_residues
MMNVNVLRLDHRIGRDTRITTHVCLTSRAFGASKIYLSGEEDHKLMENVRDTADRWGGNFEIEYAKNYMGVINKWKDNGG
KVVHLTMYGSQAHEIVSEVQKSSADILIVVGGAKVPGKVYKSADWNVSVTTQPHSEVSSLAVFQHLLMDGKEFDLEFENP
VFEVIPTAHGKNVNIHDENR

Specific function: Specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs

COG id: COG1303

COG function: function code S; Uncharacterized protein conserved in archaea

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aTrm56 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TRM56_METS3 (A5ULQ9)

Other databases:

- EMBL:   CP000678
- RefSeq:   YP_001273505.1
- ProteinModelPortal:   A5ULQ9
- SMR:   A5ULQ9
- STRING:   A5ULQ9
- GeneID:   5217514
- GenomeReviews:   CP000678_GR
- KEGG:   msi:Msm_0932
- eggNOG:   arNOG09032
- HOGENOM:   HBG297370
- OMA:   GHRPERD
- ProtClustDB:   CLSK2791202
- GO:   GO:0005737
- HAMAP:   MF_00077
- InterPro:   IPR002845
- PIRSF:   PIRSF016123
- ProDom:   PD016584

Pfam domain/function: PF01994 DUF127

EC number: NA

Molecular weight: Translated: 20226; Mature: 20226

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: NA

Important sites: BINDING 85-85

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNVNVLRLDHRIGRDTRITTHVCLTSRAFGASKIYLSGEEDHKLMENVRDTADRWGGNF
CCCEEEEEECCCCCCCCEEEEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCE
EIEYAKNYMGVINKWKDNGGKVVHLTMYGSQAHEIVSEVQKSSADILIVVGGAKVPGKVY
EEEEHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHCCCCEEEEECCCCCCCHHC
KSADWNVSVTTQPHSEVSSLAVFQHLLMDGKEFDLEFENPVFEVIPTAHGKNVNIHDENR
CCCCCEEEEEECCHHHHHHHHHHHHHHHCCCEECEEECCCEEEEEECCCCCEECCCCCCC
>Mature Secondary Structure
MMNVNVLRLDHRIGRDTRITTHVCLTSRAFGASKIYLSGEEDHKLMENVRDTADRWGGNF
CCCEEEEEECCCCCCCCEEEEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCE
EIEYAKNYMGVINKWKDNGGKVVHLTMYGSQAHEIVSEVQKSSADILIVVGGAKVPGKVY
EEEEHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHCCCCEEEEECCCCCCCHHC
KSADWNVSVTTQPHSEVSSLAVFQHLLMDGKEFDLEFENPVFEVIPTAHGKNVNIHDENR
CCCCCEEEEEECCHHHHHHHHHHHHHHHCCCEECEEECCCEEEEEECCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA