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The map label for this gene is cbiD

Identifier: 148642897

GI number: 148642897

Start: 794311

End: 795396

Strand: Reverse

Name: cbiD

Synonym: Msm_0837

Alternate gene names: 148642897

Gene position: 795396-794311 (Counterclockwise)

Preceding gene: 148642898

Following gene: 148642896

Centisome position: 42.92

GC content: 33.79

Gene sequence:

>1086_bases
ATGACAAATGAAAATTATACTGGAGTTACTACTGGAACTATAGCTACTGCCTGTTCTCTTGCAGCTTTGGAATCTATTTT
GGATACTTCAGATATTGATTGTGTCAAAGTCAAAACACCTAAAAAAACTTTAGACATTATAATTGATGAATGCAAAAGGT
TATCTCATTCTTCTGCCTGTGCTGTAGCTCATAAGAATCCTTATAATGATCCTGATGTTACTGTAGGTCTGGCTATTGTT
GCTACTGTTGAATTATTGGATAAAACCAGTGATGGAGATAGTGTCATAATAACTGGTGGTGAGGGTGTTGGTAAAATAAC
AAAACCTGGCCTTCAAATTCCAGTGGGGGAATATGCAATAAATCCGGTTCCCCGCAGAATGATTAGGAAAAATTTGGAAA
GGATTTTGCCGGAAGATAAAGTAGCTAAAGTAACAATTTCAATTCCTGAAGGTCGAAAGATAGCTAAAAAAACAATGAAT
CCTAAATTGGGTATTGTTGGAGGAATATCTGTCATTGGAACTACTGGAATAGCCAGATCCATGTCTAGTGAAGCTTATAA
AAATTCCATTGTTACTCAAATAGATGTTGCATTGGCTTTAAATTTGGATAATCTGGTTTTTGTTCCGGGAAATATTGGTG
AAAAATTGGCATTAAAGCAACTTGACATTACAAAGCAGCATATTATTCAGACTGGAAATTATGTGGGTTTTATGTTTGAG
GAAGCCAAAAAAAGAGGAATTGATGAATTTACTTTCTTTGGTCACATTGGAAAGCTGATTAAAATAGCCGGTGGAATTTT
TAACACCAAACATGCAATAGCAGACGGAAGACGGGAAATAATGATTACTCATGCAGGTATTTGCGGTGCTGATACAAAAA
CACTTCAGAAACTGTATGATTCTAAAACAACTGAAGACATGTTGGATATTTTAGATGAAGAAAATTTGCATTTGGATGTT
TGTAATAGTATTGCATTGGCTATTAAAGAGAGATGTATGCAGAGATTTGATTTAGATTTAAATGTTATTTTGGTTGATAT
GGAAGGTAACTATTTAAATGATAATTTTGAAAGGTTTTTATTATGA

Upstream 100 bases:

>100_bases
TGATGAAGTGGCATTTGTTGGTGCACCTGCTTTAGATGAACTTGTTAATAAAGTTAAATCTTTGATTTAATTTTATCTTC
TTTTTTTATAACTTGTAAAC

Downstream 100 bases:

>100_bases
AAATAGCAATGGTCGGTCAGTTTCCGCCTCATGTAGGTGGTGTAGGGGTTCATATTCATACTTTATCCAAGGAACTTGTA
AAACAAGGTCATAAAGTTTA

Product: cobalt-precorrin-6A synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 360

Protein sequence:

>361_residues
MTNENYTGVTTGTIATACSLAALESILDTSDIDCVKVKTPKKTLDIIIDECKRLSHSSACAVAHKNPYNDPDVTVGLAIV
ATVELLDKTSDGDSVIITGGEGVGKITKPGLQIPVGEYAINPVPRRMIRKNLERILPEDKVAKVTISIPEGRKIAKKTMN
PKLGIVGGISVIGTTGIARSMSSEAYKNSIVTQIDVALALNLDNLVFVPGNIGEKLALKQLDITKQHIIQTGNYVGFMFE
EAKKRGIDEFTFFGHIGKLIKIAGGIFNTKHAIADGRREIMITHAGICGADTKTLQKLYDSKTTEDMLDILDEENLHLDV
CNSIALAIKERCMQRFDLDLNVILVDMEGNYLNDNFERFLL

Sequences:

>Translated_361_residues
MTNENYTGVTTGTIATACSLAALESILDTSDIDCVKVKTPKKTLDIIIDECKRLSHSSACAVAHKNPYNDPDVTVGLAIV
ATVELLDKTSDGDSVIITGGEGVGKITKPGLQIPVGEYAINPVPRRMIRKNLERILPEDKVAKVTISIPEGRKIAKKTMN
PKLGIVGGISVIGTTGIARSMSSEAYKNSIVTQIDVALALNLDNLVFVPGNIGEKLALKQLDITKQHIIQTGNYVGFMFE
EAKKRGIDEFTFFGHIGKLIKIAGGIFNTKHAIADGRREIMITHAGICGADTKTLQKLYDSKTTEDMLDILDEENLHLDV
CNSIALAIKERCMQRFDLDLNVILVDMEGNYLNDNFERFLL
>Mature_360_residues
TNENYTGVTTGTIATACSLAALESILDTSDIDCVKVKTPKKTLDIIIDECKRLSHSSACAVAHKNPYNDPDVTVGLAIVA
TVELLDKTSDGDSVIITGGEGVGKITKPGLQIPVGEYAINPVPRRMIRKNLERILPEDKVAKVTISIPEGRKIAKKTMNP
KLGIVGGISVIGTTGIARSMSSEAYKNSIVTQIDVALALNLDNLVFVPGNIGEKLALKQLDITKQHIIQTGNYVGFMFEE
AKKRGIDEFTFFGHIGKLIKIAGGIFNTKHAIADGRREIMITHAGICGADTKTLQKLYDSKTTEDMLDILDEENLHLDVC
NSIALAIKERCMQRFDLDLNVILVDMEGNYLNDNFERFLL

Specific function: May catalyze the methylation of C-1 in cobalt-precorrin- 5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A

COG id: COG1903

COG function: function code H; Cobalamin biosynthesis protein CbiD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CBID_METS3 (A5ULG4)

Other databases:

- EMBL:   CP000678
- RefSeq:   YP_001273410.1
- ProteinModelPortal:   A5ULG4
- SMR:   A5ULG4
- STRING:   A5ULG4
- GeneID:   5217266
- GenomeReviews:   CP000678_GR
- KEGG:   msi:Msm_0837
- eggNOG:   arNOG08460
- HOGENOM:   HBG705387
- OMA:   HTHARTA
- ProtClustDB:   PRK00075
- HAMAP:   MF_00787
- InterPro:   IPR002748
- PIRSF:   PIRSF026782
- TIGRFAMs:   TIGR00312

Pfam domain/function: PF01888 CbiD; SSF111342 Cbl_biosynth_CbiD

EC number: NA

Molecular weight: Translated: 39375; Mature: 39244

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNENYTGVTTGTIATACSLAALESILDTSDIDCVKVKTPKKTLDIIIDECKRLSHSSAC
CCCCCCCCEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCEE
AVAHKNPYNDPDVTVGLAIVATVELLDKTSDGDSVIITGGEGVGKITKPGLQIPVGEYAI
EEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHC
NPVPRRMIRKNLERILPEDKVAKVTISIPEGRKIAKKTMNPKLGIVGGISVIGTTGIARS
CHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHCCCCCEEEECHHHHCCHHHHHH
MSSEAYKNSIVTQIDVALALNLDNLVFVPGNIGEKLALKQLDITKQHIIQTGNYVGFMFE
HHHHHHHHHHHHEEEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEHEEH
EAKKRGIDEFTFFGHIGKLIKIAGGIFNTKHAIADGRREIMITHAGICGADTKTLQKLYD
HHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCEEEEEEECCCCCCCHHHHHHHHC
SKTTEDMLDILDEENLHLDVCNSIALAIKERCMQRFDLDLNVILVDMEGNYLNDNFERFL
CCCHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHC
L
C
>Mature Secondary Structure 
TNENYTGVTTGTIATACSLAALESILDTSDIDCVKVKTPKKTLDIIIDECKRLSHSSAC
CCCCCCCEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCEE
AVAHKNPYNDPDVTVGLAIVATVELLDKTSDGDSVIITGGEGVGKITKPGLQIPVGEYAI
EEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHC
NPVPRRMIRKNLERILPEDKVAKVTISIPEGRKIAKKTMNPKLGIVGGISVIGTTGIARS
CHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHCCCCCEEEECHHHHCCHHHHHH
MSSEAYKNSIVTQIDVALALNLDNLVFVPGNIGEKLALKQLDITKQHIIQTGNYVGFMFE
HHHHHHHHHHHHEEEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEHEEH
EAKKRGIDEFTFFGHIGKLIKIAGGIFNTKHAIADGRREIMITHAGICGADTKTLQKLYD
HHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCEEEEEEECCCCCCCHHHHHHHHC
SKTTEDMLDILDEENLHLDVCNSIALAIKERCMQRFDLDLNVILVDMEGNYLNDNFERFL
CCCHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHC
L
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA