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The map label for this gene is rps4e

Identifier: 148642809

GI number: 148642809

Start: 715356

End: 716084

Strand: Reverse

Name: rps4e

Synonym: Msm_0749

Alternate gene names: 148642809

Gene position: 716084-715356 (Counterclockwise)

Preceding gene: 148642810

Following gene: 148642808

Centisome position: 38.64

GC content: 29.22

Gene sequence:

>729_bases
ATGGCTAAAATGGGATCTAGAAAACATTTAAAAACATACAAAGCACCAAAAACTTGGCCTATTCATCCTAAAGAAGATAC
CTGGACTGTCAAACCTTCAGCAGGTTCACATTCTATTGAGAATTCTTTATCTTTAACTTTAGTTATTAGAGATATTTTAA
AATTAGCTGATAATTCTAGGGAAGCTAAAAGAATCATCAACTCAGGTAATGTTCTTGTAGATGGAAGAGTAATTAAAGAT
TATAAATTCCCAGTTGGTTTCATGGATATTATTGAAATCCCAAAAACTGGTGAAGTTTATAGAGTGCTTTTAGATAAAAA
AGGAAGATTACAATTAAATAAAATTGAAGAAAACGATTCTAAATTATGTAAAATAGTTAATAAATCTACTATTAAAGGTG
GAAAAATCCAAGTAAACCTTCATGATGGTAAAAACGTAATTATTGATGAAAATGATTACAATGTAGGAGATGTTATTGAC
TTAAAAGTACCTGATCACGAAATCAATGAAGTTTTCGAATTAAAAGAAGGTGCTTGTGTACTCATTACTGGTGGTAAACA
CACTGGTGAATTAGGTACAGTTTCTGAAATTATTGTAAACGAATCTTCTAATCCGAACACTATTATTATTGAAAATAGTG
CTAAAGATGAATTTTTAACTTTAAAAGATTATGCATTTGTAGTTGGTGAAGATGCACCAGCAATATCTTTATTGGAGGTT
AATAAATGA

Upstream 100 bases:

>100_bases
ACTGCAGTTTTCCTTCCAGTAGATCCATCTAACGTAATGATTATTGATGCAGATATGGATGACGATAGAAGAATTAAAAA
TGTAACAGGAGACAATTAAA

Downstream 100 bases:

>100_bases
ACCCAATGAACGAAGTACAAATTTCTAAAGCTACTGTCAGCATTGGTGTCGGTGAAGCAGGTGAAAAATTATCCCGTGCT
ATTACCCTTTTAGAACAAAT

Product: 30S ribosomal protein S4e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MAKMGSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKRIINSGNVLVDGRVIKD
YKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKIEENDSKLCKIVNKSTIKGGKIQVNLHDGKNVIIDENDYNVGDVID
LKVPDHEINEVFELKEGACVLITGGKHTGELGTVSEIIVNESSNPNTIIIENSAKDEFLTLKDYAFVVGEDAPAISLLEV
NK

Sequences:

>Translated_242_residues
MAKMGSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKRIINSGNVLVDGRVIKD
YKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKIEENDSKLCKIVNKSTIKGGKIQVNLHDGKNVIIDENDYNVGDVID
LKVPDHEINEVFELKEGACVLITGGKHTGELGTVSEIIVNESSNPNTIIIENSAKDEFLTLKDYAFVVGEDAPAISLLEV
NK
>Mature_241_residues
AKMGSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKRIINSGNVLVDGRVIKDY
KFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKIEENDSKLCKIVNKSTIKGGKIQVNLHDGKNVIIDENDYNVGDVIDL
KVPDHEINEVFELKEGACVLITGGKHTGELGTVSEIIVNESSNPNTIIIENSAKDEFLTLKDYAFVVGEDAPAISLLEVN
K

Specific function: Unknown

COG id: COG1471

COG function: function code J; Ribosomal protein S4E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain

Homologues:

Organism=Homo sapiens, GI4506725, Length=243, Percent_Identity=31.2757201646091, Blast_Score=122, Evalue=4e-28,
Organism=Homo sapiens, GI4506727, Length=243, Percent_Identity=30.4526748971193, Blast_Score=115, Evalue=2e-26,
Organism=Homo sapiens, GI88703062, Length=243, Percent_Identity=28.8065843621399, Blast_Score=108, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI17543386, Length=236, Percent_Identity=33.8983050847458, Blast_Score=134, Evalue=4e-32,
Organism=Saccharomyces cerevisiae, GI6322605, Length=240, Percent_Identity=33.75, Blast_Score=130, Evalue=1e-31,
Organism=Saccharomyces cerevisiae, GI6321997, Length=240, Percent_Identity=33.75, Blast_Score=130, Evalue=1e-31,
Organism=Drosophila melanogaster, GI24663672, Length=243, Percent_Identity=32.9218106995885, Blast_Score=129, Evalue=2e-30,
Organism=Drosophila melanogaster, GI24663668, Length=243, Percent_Identity=32.9218106995885, Blast_Score=129, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS4E_METS3 (A5UL76)

Other databases:

- EMBL:   CP000678
- RefSeq:   YP_001273322.1
- ProteinModelPortal:   A5UL76
- STRING:   A5UL76
- GeneID:   5215721
- GenomeReviews:   CP000678_GR
- KEGG:   msi:Msm_0749
- eggNOG:   arNOG06304
- HOGENOM:   HBG392118
- OMA:   QLNLHDG
- ProtClustDB:   PRK04313
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00485
- InterPro:   IPR005824
- InterPro:   IPR000876
- InterPro:   IPR022994
- InterPro:   IPR013845
- InterPro:   IPR013843
- InterPro:   IPR002942
- PANTHER:   PTHR11581
- PIRSF:   PIRSF002116
- ProDom:   PD002667
- SMART:   SM00739
- SMART:   SM00363

Pfam domain/function: PF00900 Ribosomal_S4e; PF08071 RS4NT; PF01479 S4

EC number: NA

Molecular weight: Translated: 26886; Mature: 26755

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS00528 RIBOSOMAL_S4E; PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKMGSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSR
CCCCCCCCHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEHHHHHHHHHHHCCCH
EAKRIINSGNVLVDGRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKIEENDS
HHHHHHCCCCEEECCEEEEEECCCCCHHHEEECCCCCCEEEEEECCCCCEEEEEECCCCH
KLCKIVNKSTIKGGKIQVNLHDGKNVIIDENDYNVGDVIDLKVPDHEINEVFELKEGACV
HHHHHHHHCCCCCCEEEEEEECCCEEEEECCCCCCCCEEEEECCCHHHHHHHHHCCCCEE
LITGGKHTGELGTVSEIIVNESSNPNTIIIENSAKDEFLTLKDYAFVVGEDAPAISLLEV
EEECCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCEEEEEEEEEEEECCCCEEEEEEE
NK
CC
>Mature Secondary Structure 
AKMGSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSR
CCCCCCCHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEHHHHHHHHHHHCCCH
EAKRIINSGNVLVDGRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKIEENDS
HHHHHHCCCCEEECCEEEEEECCCCCHHHEEECCCCCCEEEEEECCCCCEEEEEECCCCH
KLCKIVNKSTIKGGKIQVNLHDGKNVIIDENDYNVGDVIDLKVPDHEINEVFELKEGACV
HHHHHHHHCCCCCCEEEEEEECCCEEEEECCCCCCCCEEEEECCCHHHHHHHHHCCCCEE
LITGGKHTGELGTVSEIIVNESSNPNTIIIENSAKDEFLTLKDYAFVVGEDAPAISLLEV
EEECCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCEEEEEEEEEEEECCCCEEEEEEE
NK
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA