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The map label for this gene is rpl15p

Identifier: 148642799

GI number: 148642799

Start: 710663

End: 711100

Strand: Reverse

Name: rpl15p

Synonym: Msm_0739

Alternate gene names: 148642799

Gene position: 711100-710663 (Counterclockwise)

Preceding gene: 148642800

Following gene: 148642798

Centisome position: 38.37

GC content: 33.56

Gene sequence:

>438_bases
ATGATTAGATCAAAACGTAAAATTAATAAACTCAGAGGTTCTAGATCCAACGGTGGAGGCTGTACCAAAAAACGTAGAGG
TGCAGGTAACAAAGGTGGTAGAGGTAATGCAGGAGCTTCCAAACAACATTGGACTTGGACTGCAAAATTTGACCCAGACC
ATTATGGTAAACATGGATTCAAAAGACCTCAAAAAATGATTAAAAAAGTAAATCCAGTTAATTTAAGTTACTTGGAAGAA
CAAGCTGATAATTTAATTGAAAGCGGTAAAGCATCTAAAGATGGAGATTCCATTGTTATTGATGTTACTGAATTAGGTTA
TGATAAAGTTTTAGCTAAAGGTAAAATAACTAAATCTTTCATTATTTCAGCACCTCAATTTTCTGCTTCAGCTATTGAAA
AAATTGAAGAAATGGGAGGAGAAGCTATCGAATTATAG

Upstream 100 bases:

>100_bases
ATACGAAGACATCCGTCTTTCTGTTAAAGAAGGAGGATCCTTAGGTTACAGGGGAGAAAATATTAAAGATCTTGCAGAAA
GAATGCTTTAGGTGTATAAG

Downstream 100 bases:

>100_bases
TTTCTTTTTTTCTTTTCTTTTTTATTAGAGGAATAAAATGTCATCATTAAAAGTTTTAGAGCCATTATTTAGGTTTTTAC
CAGAAGTAAAATCTCCTGTT

Product: 50S ribosomal protein L15P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MIRSKRKINKLRGSRSNGGGCTKKRRGAGNKGGRGNAGASKQHWTWTAKFDPDHYGKHGFKRPQKMIKKVNPVNLSYLEE
QADNLIESGKASKDGDSIVIDVTELGYDKVLAKGKITKSFIISAPQFSASAIEKIEEMGGEAIEL

Sequences:

>Translated_145_residues
MIRSKRKINKLRGSRSNGGGCTKKRRGAGNKGGRGNAGASKQHWTWTAKFDPDHYGKHGFKRPQKMIKKVNPVNLSYLEE
QADNLIESGKASKDGDSIVIDVTELGYDKVLAKGKITKSFIISAPQFSASAIEKIEEMGGEAIEL
>Mature_145_residues
MIRSKRKINKLRGSRSNGGGCTKKRRGAGNKGGRGNAGASKQHWTWTAKFDPDHYGKHGFKRPQKMIKKVNPVNLSYLEE
QADNLIESGKASKDGDSIVIDVTELGYDKVLAKGKITKSFIISAPQFSASAIEKIEEMGGEAIEL

Specific function: Binds to the 23S rRNA

COG id: COG0200

COG function: function code J; Ribosomal protein L15

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L15P family

Homologues:

Organism=Homo sapiens, GI4506625, Length=144, Percent_Identity=38.1944444444444, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17509867, Length=149, Percent_Identity=36.9127516778523, Blast_Score=69, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL15_METS3 (A5UL66)

Other databases:

- EMBL:   CP000678
- RefSeq:   YP_001273312.1
- ProteinModelPortal:   A5UL66
- SMR:   A5UL66
- STRING:   A5UL66
- GeneID:   5216958
- GenomeReviews:   CP000678_GR
- KEGG:   msi:Msm_0739
- eggNOG:   arNOG11273
- HOGENOM:   HBG727142
- OMA:   GSRTCGG
- ProtClustDB:   PRK06419
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01341_A
- InterPro:   IPR001196
- InterPro:   IPR021131

Pfam domain/function: PF00828 Ribosomal_L18e; SSF52080 Ribosomal_L18e/L15

EC number: NA

Molecular weight: Translated: 15862; Mature: 15862

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: PS00475 RIBOSOMAL_L15

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRSKRKINKLRGSRSNGGGCTKKRRGAGNKGGRGNAGASKQHWTWTAKFDPDHYGKHGF
CCCCHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCH
KRPQKMIKKVNPVNLSYLEEQADNLIESGKASKDGDSIVIDVTELGYDKVLAKGKITKSF
HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHCCHHHHHHCCCCCHHH
IISAPQFSASAIEKIEEMGGEAIEL
EECCCCCCHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MIRSKRKINKLRGSRSNGGGCTKKRRGAGNKGGRGNAGASKQHWTWTAKFDPDHYGKHGF
CCCCHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCH
KRPQKMIKKVNPVNLSYLEEQADNLIESGKASKDGDSIVIDVTELGYDKVLAKGKITKSF
HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHCCHHHHHHCCCCCHHH
IISAPQFSASAIEKIEEMGGEAIEL
EECCCCCCHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA