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The map label for this gene is rnp4

Identifier: 148642771

GI number: 148642771

Start: 680020

End: 680385

Strand: Reverse

Name: rnp4

Synonym: Msm_0711

Alternate gene names: 148642771

Gene position: 680385-680020 (Counterclockwise)

Preceding gene: 148642773

Following gene: 148642770

Centisome position: 36.71

GC content: 35.79

Gene sequence:

>366_bases
TTGAGTAGAGGAAAAAGACCAAAATGGATGATTGAAATAGCTATTGAACGTATGAATATTCTTTTTGAGCGTGCTGAGAT
GGAATTCGAAAGGCACCCGGAAAGAAGTAACCGTTATGTTGTATTAGCTAAGAAATTATCTACCAAGTACAATACCAAAA
TTCCCGATAAATGGGCAAGAAGGTATTGTAAAAGGTGTAATAAGTTTCTCTACCCTGGTCACAACGCTACAGTCCGGCTG
GTTAACGAAGAAGTTAACATTTTATGTGGCGAGTGTGGGCATGTTATGAAAATTCCTTATCATAAGGAGAAAAAAAATAA
AAGGAGAGCTAGATATGAGTCAATCAAAAAAAGAAATGATGAATAG

Upstream 100 bases:

>100_bases
CTATGGTTTTTGTTTTAATATGCGCAAATCATTTTAATTCAATTTTTGAATATTATATCCTAATTTAATAGTTATTATTA
TAATTATGAGGAGGATATCT

Downstream 100 bases:

>100_bases
AGCTCTTTCCGCTATGACAATGAATATTGGTAAGGCTGGTGTTAATGACAATGTCATTGAAGAAATCAAACGCCAACTTA
AAGCTAATGAAATTGTTAAA

Product: ribonuclease P, subunit RPR2

Products: NA

Alternate protein names: RNase P component 4

Number of amino acids: Translated: 121; Mature: 120

Protein sequence:

>121_residues
MSRGKRPKWMIEIAIERMNILFERAEMEFERHPERSNRYVVLAKKLSTKYNTKIPDKWARRYCKRCNKFLYPGHNATVRL
VNEEVNILCGECGHVMKIPYHKEKKNKRRARYESIKKRNDE

Sequences:

>Translated_121_residues
MSRGKRPKWMIEIAIERMNILFERAEMEFERHPERSNRYVVLAKKLSTKYNTKIPDKWARRYCKRCNKFLYPGHNATVRL
VNEEVNILCGECGHVMKIPYHKEKKNKRRARYESIKKRNDE
>Mature_120_residues
SRGKRPKWMIEIAIERMNILFERAEMEFERHPERSNRYVVLAKKLSTKYNTKIPDKWARRYCKRCNKFLYPGHNATVRLV
NEEVNILCGECGHVMKIPYHKEKKNKRRARYESIKKRNDE

Specific function: Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends

COG id: COG2023

COG function: function code J; RNase P subunit RPR2

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eukaryotic/archaeal RNase P protein component 4 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNP4_METS3 (A5UL38)

Other databases:

- EMBL:   CP000678
- RefSeq:   YP_001273284.1
- ProteinModelPortal:   A5UL38
- SMR:   A5UL38
- STRING:   A5UL38
- GeneID:   5216098
- GenomeReviews:   CP000678_GR
- KEGG:   msi:Msm_0711
- eggNOG:   arNOG12643
- HOGENOM:   HBG731499
- OMA:   IAMERIS
- ProtClustDB:   CLSK798223
- HAMAP:   MF_00757
- InterPro:   IPR016432
- InterPro:   IPR007175
- PIRSF:   PIRSF004878

Pfam domain/function: PF04032 Rpr2

EC number: =3.1.26.5

Molecular weight: Translated: 14728; Mature: 14597

Theoretical pI: Translated: 10.61; Mature: 10.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRGKRPKWMIEIAIERMNILFERAEMEFERHPERSNRYVVLAKKLSTKYNTKIPDKWAR
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHHHH
RYCKRCNKFLYPGHNATVRLVNEEVNILCGECGHVMKIPYHKEKKNKRRARYESIKKRND
HHHHHHCCCCCCCCCCEEEEECCCCEEEECCCCCEEECCCCCCHHHHHHHHHHHHHHCCC
E
C
>Mature Secondary Structure 
SRGKRPKWMIEIAIERMNILFERAEMEFERHPERSNRYVVLAKKLSTKYNTKIPDKWAR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHHHH
RYCKRCNKFLYPGHNATVRLVNEEVNILCGECGHVMKIPYHKEKKNKRRARYESIKKRND
HHHHHHCCCCCCCCCCEEEEECCCCEEEECCCCCEEECCCCCCHHHHHHHHHHHHHHCCC
E
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA