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The map label for this gene is 148642768

Identifier: 148642768

GI number: 148642768

Start: 678871

End: 679227

Strand: Reverse

Name: 148642768

Synonym: Msm_0708

Alternate gene names: NA

Gene position: 679227-678871 (Counterclockwise)

Preceding gene: 148642769

Following gene: 148642767

Centisome position: 36.65

GC content: 36.97

Gene sequence:

>357_bases
ATGAGTGATCTTGATGAAATTCGCCGCAAAAGAATGGCGGAATTAGAAGCCAGACAAGCTGCTGCACAAGGTCAAATGCA
ACAACAAGCACAACAACAAATGCAACAGCAAGAAGCACAAAGACAATTTGAGGAGCAAAAGAAAGCTTTAATAGCTCAAA
TTTTGACTACTGAAGCACGTTCCAGATTAGCTAACCTTAAATTGACTAAGCCAGAGCTTGTTAATCAAATTGAAATTCAG
TTAATTCAATCTGCTCAGGCCGGCAGTTTAAGAGGTAAAGTAACTGATGAACAGTTAAAAGTACTCTTGAGACAAATAGC
TGGTCAGAAAAGAGAAATTAAAATTACAAGGAAATAA

Upstream 100 bases:

>100_bases
CTCCAGCAGGAAGATCATTCTTAGATAAAATTTCTGCTGAAATCATTAAGGATATTCCTAATCTTGCAAAATATTAATTA
AATTATTCGGAGAGTTTGAT

Downstream 100 bases:

>100_bases
TATTAATGAAAGCTTGTGTATTATACAGTGGAGGAAAAGACAGTTCTTTTATGGGTGTTATGCTTAAAAGACTTGGTCTT
GATGTTGAATTGTGCACTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 118; Mature: 117

Protein sequence:

>118_residues
MSDLDEIRRKRMAELEARQAAAQGQMQQQAQQQMQQQEAQRQFEEQKKALIAQILTTEARSRLANLKLTKPELVNQIEIQ
LIQSAQAGSLRGKVTDEQLKVLLRQIAGQKREIKITRK

Sequences:

>Translated_118_residues
MSDLDEIRRKRMAELEARQAAAQGQMQQQAQQQMQQQEAQRQFEEQKKALIAQILTTEARSRLANLKLTKPELVNQIEIQ
LIQSAQAGSLRGKVTDEQLKVLLRQIAGQKREIKITRK
>Mature_117_residues
SDLDEIRRKRMAELEARQAAAQGQMQQQAQQQMQQQEAQRQFEEQKKALIAQILTTEARSRLANLKLTKPELVNQIEIQL
IQSAQAGSLRGKVTDEQLKVLLRQIAGQKREIKITRK

Specific function: Unknown

COG id: COG2118

COG function: function code R; DNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PDCD5 family

Homologues:

Organism=Homo sapiens, GI4759224, Length=111, Percent_Identity=37.8378378378378, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y708_METS3 (A5UL35)

Other databases:

- EMBL:   CP000678
- RefSeq:   YP_001273281.1
- ProteinModelPortal:   A5UL35
- SMR:   A5UL35
- STRING:   A5UL35
- GeneID:   5216002
- GenomeReviews:   CP000678_GR
- KEGG:   msi:Msm_0708
- eggNOG:   arNOG12642
- HOGENOM:   HBG726401
- OMA:   LYQAGQI
- ProtClustDB:   PRK04239
- HAMAP:   MF_00026
- InterPro:   IPR022889
- InterPro:   IPR002836
- Gene3D:   G3DSA:1.10.8.140
- PANTHER:   PTHR10840
- PIRSF:   PIRSF015730

Pfam domain/function: PF01984 dsDNA_bind; SSF46950 TFAR19-related

EC number: NA

Molecular weight: Translated: 13592; Mature: 13461

Theoretical pI: Translated: 10.93; Mature: 10.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLDEIRRKRMAELEARQAAAQGQMQQQAQQQMQQQEAQRQFEEQKKALIAQILTTEAR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRLANLKLTKPELVNQIEIQLIQSAQAGSLRGKVTDEQLKVLLRQIAGQKREIKITRK
HHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCEEECCC
>Mature Secondary Structure 
SDLDEIRRKRMAELEARQAAAQGQMQQQAQQQMQQQEAQRQFEEQKKALIAQILTTEAR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRLANLKLTKPELVNQIEIQLIQSAQAGSLRGKVTDEQLKVLLRQIAGQKREIKITRK
HHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA