| Definition | Methanobrevibacter smithii ATCC 35061 chromosome, complete genome. |
|---|---|
| Accession | NC_009515 |
| Length | 1,853,160 |
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The map label for this gene is yejH [C]
Identifier: 148642755
GI number: 148642755
Start: 667107
End: 669131
Strand: Reverse
Name: yejH [C]
Synonym: Msm_0695
Alternate gene names: 148642755
Gene position: 669131-667107 (Counterclockwise)
Preceding gene: 148642757
Following gene: 148642754
Centisome position: 36.11
GC content: 28.1
Gene sequence:
>2025_bases ATGGTATTTAAAGATATTGATTCGGAGGTGAGTCCAAGTTATAATTCTGCACATGATGATATTGTAAATAATTTTTATAA TTTGGTATTATCTGAGGCAATAAAATATGACCGTATATCTGGATTTTTTAATTCCACTAGTTTGGCGATTGCTGCAAGAG GTATTGATAAATTTATAAAAAATAATGGGCATATGCGCCTTATTTGCGGCGCTAAATTGAATGTTGCTGATTTGGAATCT ATTAACAATTCTGATGATTTGAAAAATATTATTGATATTAATTTTTTAAAAGATTATGATTCTATTGAAGATGAAATAGT AAAGAATCATGTTAAAGTATTGGGATGGATGGTGGCTAATAATTATTTGGAAATTAAAATTGGGGTTAATCGTAAAAAGG ATGGTTTTTATGAATCTGGAATGATACATTCTAAAATTGGGATAATGTATGATGAATTGGATGATTCAATATTATTTGAT GGGTCTGTAAATGAAACTGCTTTCGGATGGAAAAATAATATTGAATCATTAAAAGTATTTAAAAGTTGGAAAAATCCGGA ATTTATGGAAAATGATAAAAAAGATTTTGAAAATTTTTGGGAGGGTAACGACCCATCTTTGGAGCTGTTTGATGTTCCTG ATGCAACAAAAAAGAAGTTAATTGAAATAGCTCCCAATTCTAAAGATGAACTTTTTAATTTAAAATTAGACTCTAAACCA AAATTGCGTGATTATCAAGAAGAAGCTGTTGAAAATTGGATAAATAATAATTATCGCGGTATCTTTAGCATGGCTACAGG TACGGGAAAAACATTCACTGCATTATCCTGTTGGGATTATTTACGAAATAAAAAAAATAATCTTTTAACTATCATTGTAT GTCCTCAAAAACATTTAATAAGTCAATGGGAAAGTAATTTGAAAGAATTTGGTTTTAATGGAAGTATTCTTATTGCATCT GGAGATAATAATAAATGGTCTTCTGAATTATTGGGTTTAATTGGGGATTTGGAGTCTTCTTTTAATTCAAATAATCAGGT TGTAGTTTTTACCACATTTAAAACATTTGCTAGTGAAAAGTTTAGAAAAAAAATTGATTTTTTTGAGGGGGATAGTTTAG TAATTGTAGATGAAGTTCATGGCATAGGTTCCTTTGAGTATAGGAAGAGTTTGTTGAATAAATATAATCATAGATTAGGT TTAAGTGCAACTCCTGAAATTGAAGATGATTTTGAAAGAACTGATTTGGTCTATGATTATTTTAATGGCATAATATATGA TTATGATTTGGAAAATGCTATTCAAAAAGGGTTTTTAACTCGTTACAATTACCATCCTATTTTTGTTGATTTAAATAATG AAGAAATGGAGTTATATAAAGATTATACTTATAAAATTAGCATTATTTTACAAAAAAAGAAAAAAACATTGTTGGATGAA AAACGGTTAAATACATTACTTATTAAGAGAAGAGATGTAATTAATAATGCTGAAGATAAATTTGCTCATTTACATACTTT TTTGAAGGATCAAGAAGATATTAAGGACTTAATTATTTATTGTACTGGCAAACAATTGCCTAAAGTTCAGAATATTTTGG ATGAATTTGATATTTCCAATCATAAATTTACTGGTGAAGAAAGCACTAAAAAAATTAATGGTAAATCTGAAAGAGACCGC ATTTTAGAATTGTTTTCTAAGGGTTACTACCAGTCTTTAGTTGCTATTAAATGTTTGGATGAAGGAGTGGATGTTCCATC TACTCAAACAGCATTTTTAATGGCAAGTACATTAAATTCTAGACAACATATTCAAAGAAGGGGAAGAGTATTAAGAAAAA GTCCGGGCAAATCAAAAGCTAATATTTACGATTTAATAATTTTTCCAAAACTTAAAGGTGAATCGAATTCTGTTAAAACA ATTTTTAAAAACGAACAGAAACGTTATGATGAATATGCTGACTTGGCAGATAATTCTTCAGAATGTAGCCAAAAATTCTT AAAAAAATGGGAGGAAATCACATGA
Upstream 100 bases:
>100_bases TTGTAATAGTTAATAAAATAATATTAAATTGTTTCAATTTGAAAAATTGATTCGAGTAAGGAATATTGTTTTCTTTCTAA TTTATTTATGTGGTATTTAT
Downstream 100 bases:
>100_bases CTAAAATAAATTTAGAAATAATTGATTATATTAGGGAAGCTGATTTTGATGAAAATTTAAAAAATTTTTTCATTTCTGCA ATATTATATGAATTAAGAAA
Product: DNA repair helicase
Products: NA
Alternate protein names: Type III Restriction Res Subunit; DNA Repair Helicase; DNA Repair Helicase RAD; Superfamily II DNA/RNA Helicase; DNA Repair Helicase Rad; Helicase Domain-Containing Protein; Helicase Domain Protein; Type III Restriction Res Subunit Family; Helicase; DNA Repair Protein Rad; Helicase-Like; Helicase-Like Protein; DEAD/H Helicase; SNF2 Family DNA/RNA Helicase; DNA Repair Protein; DNA Repair Protein RAD; Phage DEAD Box Family Helicase; DNA-Repair Protein; DNA-Repair Helicase; Helicase DNA Repair Rad; XPB/RAD25-Related Helicase; II DNA/RNA Helicase; DNA/RNA Helicase; Type III Restriction- System Subunit Res; RAD25-Type DNA Repair Helicase; DNA Repair Related Protein; Restriction; DEAD/DEAH Box Helicase Domain-Containing Protein; DNA Helicase; Type I Site-Specific Deoxyribonuclease
Number of amino acids: Translated: 674; Mature: 674
Protein sequence:
>674_residues MVFKDIDSEVSPSYNSAHDDIVNNFYNLVLSEAIKYDRISGFFNSTSLAIAARGIDKFIKNNGHMRLICGAKLNVADLES INNSDDLKNIIDINFLKDYDSIEDEIVKNHVKVLGWMVANNYLEIKIGVNRKKDGFYESGMIHSKIGIMYDELDDSILFD GSVNETAFGWKNNIESLKVFKSWKNPEFMENDKKDFENFWEGNDPSLELFDVPDATKKKLIEIAPNSKDELFNLKLDSKP KLRDYQEEAVENWINNNYRGIFSMATGTGKTFTALSCWDYLRNKKNNLLTIIVCPQKHLISQWESNLKEFGFNGSILIAS GDNNKWSSELLGLIGDLESSFNSNNQVVVFTTFKTFASEKFRKKIDFFEGDSLVIVDEVHGIGSFEYRKSLLNKYNHRLG LSATPEIEDDFERTDLVYDYFNGIIYDYDLENAIQKGFLTRYNYHPIFVDLNNEEMELYKDYTYKISIILQKKKKTLLDE KRLNTLLIKRRDVINNAEDKFAHLHTFLKDQEDIKDLIIYCTGKQLPKVQNILDEFDISNHKFTGEESTKKINGKSERDR ILELFSKGYYQSLVAIKCLDEGVDVPSTQTAFLMASTLNSRQHIQRRGRVLRKSPGKSKANIYDLIIFPKLKGESNSVKT IFKNEQKRYDEYADLADNSSECSQKFLKKWEEIT
Sequences:
>Translated_674_residues MVFKDIDSEVSPSYNSAHDDIVNNFYNLVLSEAIKYDRISGFFNSTSLAIAARGIDKFIKNNGHMRLICGAKLNVADLES INNSDDLKNIIDINFLKDYDSIEDEIVKNHVKVLGWMVANNYLEIKIGVNRKKDGFYESGMIHSKIGIMYDELDDSILFD GSVNETAFGWKNNIESLKVFKSWKNPEFMENDKKDFENFWEGNDPSLELFDVPDATKKKLIEIAPNSKDELFNLKLDSKP KLRDYQEEAVENWINNNYRGIFSMATGTGKTFTALSCWDYLRNKKNNLLTIIVCPQKHLISQWESNLKEFGFNGSILIAS GDNNKWSSELLGLIGDLESSFNSNNQVVVFTTFKTFASEKFRKKIDFFEGDSLVIVDEVHGIGSFEYRKSLLNKYNHRLG LSATPEIEDDFERTDLVYDYFNGIIYDYDLENAIQKGFLTRYNYHPIFVDLNNEEMELYKDYTYKISIILQKKKKTLLDE KRLNTLLIKRRDVINNAEDKFAHLHTFLKDQEDIKDLIIYCTGKQLPKVQNILDEFDISNHKFTGEESTKKINGKSERDR ILELFSKGYYQSLVAIKCLDEGVDVPSTQTAFLMASTLNSRQHIQRRGRVLRKSPGKSKANIYDLIIFPKLKGESNSVKT IFKNEQKRYDEYADLADNSSECSQKFLKKWEEIT >Mature_674_residues MVFKDIDSEVSPSYNSAHDDIVNNFYNLVLSEAIKYDRISGFFNSTSLAIAARGIDKFIKNNGHMRLICGAKLNVADLES INNSDDLKNIIDINFLKDYDSIEDEIVKNHVKVLGWMVANNYLEIKIGVNRKKDGFYESGMIHSKIGIMYDELDDSILFD GSVNETAFGWKNNIESLKVFKSWKNPEFMENDKKDFENFWEGNDPSLELFDVPDATKKKLIEIAPNSKDELFNLKLDSKP KLRDYQEEAVENWINNNYRGIFSMATGTGKTFTALSCWDYLRNKKNNLLTIIVCPQKHLISQWESNLKEFGFNGSILIAS GDNNKWSSELLGLIGDLESSFNSNNQVVVFTTFKTFASEKFRKKIDFFEGDSLVIVDEVHGIGSFEYRKSLLNKYNHRLG LSATPEIEDDFERTDLVYDYFNGIIYDYDLENAIQKGFLTRYNYHPIFVDLNNEEMELYKDYTYKISIILQKKKKTLLDE KRLNTLLIKRRDVINNAEDKFAHLHTFLKDQEDIKDLIIYCTGKQLPKVQNILDEFDISNHKFTGEESTKKINGKSERDR ILELFSKGYYQSLVAIKCLDEGVDVPSTQTAFLMASTLNSRQHIQRRGRVLRKSPGKSKANIYDLIIFPKLKGESNSVKT IFKNEQKRYDEYADLADNSSECSQKFLKKWEEIT
Specific function: Unknown
COG id: COG1061
COG function: function code KL; DNA or RNA helicases of superfamily II
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 77954; Mature: 77954
Theoretical pI: Translated: 5.63; Mature: 5.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVFKDIDSEVSPSYNSAHDDIVNNFYNLVLSEAIKYDRISGFFNSTSLAIAARGIDKFIK CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEHHHHHHHHH NNGHMRLICGAKLNVADLESINNSDDLKNIIDINFLKDYDSIEDEIVKNHVKVLGWMVAN CCCCEEEEECCCCCHHHHHHCCCCHHHHHHHEEHHHHCHHHHHHHHHHHHHHHHHHHEEC NYLEIKIGVNRKKDGFYESGMIHSKIGIMYDELDDSILFDGSVNETAFGWKNNIESLKVF CEEEEEEECCCCCCCCCCCCEEHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHH KSWKNPEFMENDKKDFENFWEGNDPSLELFDVPDATKKKLIEIAPNSKDELFNLKLDSKP HHCCCCCHHCCCHHHHHHHCCCCCCCEEEEECCCHHHHCEEEECCCCCCCEEEEEECCCC KLRDYQEEAVENWINNNYRGIFSMATGTGKTFTALSCWDYLRNKKNNLLTIIVCPQKHLI CCHHHHHHHHHHHHCCCCCEEEEEECCCCCEEHHHHHHHHHHCCCCCEEEEEECCCHHHH SQWESNLKEFGFNGSILIASGDNNKWSSELLGLIGDLESSFNSNNQVVVFTTFKTFASEK HHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHH FRKKIDFFEGDSLVIVDEVHGIGSFEYRKSLLNKYNHRLGLSATPEIEDDFERTDLVYDY HHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH FNGIIYDYDLENAIQKGFLTRYNYHPIFVDLNNEEMELYKDYTYKISIILQKKKKTLLDE HCCEEEEECHHHHHHHCCCEEECCCEEEEEECCCHHHHEECCEEEEEEEEEHHHHHHHHH KRLNTLLIKRRDVINNAEDKFAHLHTFLKDQEDIKDLIIYCTGKQLPKVQNILDEFDISN HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHEEEEEECCCCCHHHHHHHHHHCCCC HKFTGEESTKKINGKSERDRILELFSKGYYQSLVAIKCLDEGVDVPSTQTAFLMASTLNS CEECCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCH RQHIQRRGRVLRKSPGKSKANIYDLIIFPKLKGESNSVKTIFKNEQKRYDEYADLADNSS HHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCHH ECSQKFLKKWEEIT HHHHHHHHHHHCCC >Mature Secondary Structure MVFKDIDSEVSPSYNSAHDDIVNNFYNLVLSEAIKYDRISGFFNSTSLAIAARGIDKFIK CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEHHHHHHHHH NNGHMRLICGAKLNVADLESINNSDDLKNIIDINFLKDYDSIEDEIVKNHVKVLGWMVAN CCCCEEEEECCCCCHHHHHHCCCCHHHHHHHEEHHHHCHHHHHHHHHHHHHHHHHHHEEC NYLEIKIGVNRKKDGFYESGMIHSKIGIMYDELDDSILFDGSVNETAFGWKNNIESLKVF CEEEEEEECCCCCCCCCCCCEEHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHH KSWKNPEFMENDKKDFENFWEGNDPSLELFDVPDATKKKLIEIAPNSKDELFNLKLDSKP HHCCCCCHHCCCHHHHHHHCCCCCCCEEEEECCCHHHHCEEEECCCCCCCEEEEEECCCC KLRDYQEEAVENWINNNYRGIFSMATGTGKTFTALSCWDYLRNKKNNLLTIIVCPQKHLI CCHHHHHHHHHHHHCCCCCEEEEEECCCCCEEHHHHHHHHHHCCCCCEEEEEECCCHHHH SQWESNLKEFGFNGSILIASGDNNKWSSELLGLIGDLESSFNSNNQVVVFTTFKTFASEK HHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHH FRKKIDFFEGDSLVIVDEVHGIGSFEYRKSLLNKYNHRLGLSATPEIEDDFERTDLVYDY HHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH FNGIIYDYDLENAIQKGFLTRYNYHPIFVDLNNEEMELYKDYTYKISIILQKKKKTLLDE HCCEEEEECHHHHHHHCCCEEECCCEEEEEECCCHHHHEECCEEEEEEEEEHHHHHHHHH KRLNTLLIKRRDVINNAEDKFAHLHTFLKDQEDIKDLIIYCTGKQLPKVQNILDEFDISN HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHEEEEEECCCCCHHHHHHHHHHCCCC HKFTGEESTKKINGKSERDRILELFSKGYYQSLVAIKCLDEGVDVPSTQTAFLMASTLNS CEECCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCH RQHIQRRGRVLRKSPGKSKANIYDLIIFPKLKGESNSVKTIFKNEQKRYDEYADLADNSS HHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCHH ECSQKFLKKWEEIT HHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA