Definition Methanobrevibacter smithii ATCC 35061 chromosome, complete genome.
Accession NC_009515
Length 1,853,160

Click here to switch to the map view.

The map label for this gene is 148642480

Identifier: 148642480

GI number: 148642480

Start: 402365

End: 402865

Strand: Reverse

Name: 148642480

Synonym: Msm_0420

Alternate gene names: NA

Gene position: 402865-402365 (Counterclockwise)

Preceding gene: 148642484

Following gene: 148642471

Centisome position: 21.74

GC content: 32.73

Gene sequence:

>501_bases
ATGCTGCCGACACAAATATTAAAAATCATATTTGGATGTTTATTGTTGTTTATAGCTATTCGTAACTTGATGTCTGCCGA
TAAAAAGACTTCAAAAGCTAGAGCCAAATTTAATTTAATAAACATAGCTGTTGTAGGGGTATTGGTTGGAATTTCCTCAG
GTCTTTTAGGTGTTGGTGGAGGAGTATTTATAATTCTAATTTTAACTGTAATATTCGGATTTTCAATGATTGAAGCTATC
GGAATTTCATCAGTATTTATTAGCCTAACAGCTATTGGAGGGACCGTATCATATATAATATCTGGCTGGGGAGTTAATCC
GTTTCCGTATTCATTGGGTTATGTAAGTTTAGTTAATTTTGCAGTTATCGCAATGTTTTCAGTACCTTTAGCTTATTATG
GTGCAAAAATAGCTCATAAGGTTCCTGAAAAAAGATTAAAACAGATATTTGGTTTGGTGGTTTTGTATATTTCACTTAAA
ATGCTGGGAGTAGTTCCTTAA

Upstream 100 bases:

>100_bases
ATCCAGGCATTTAAAAGTTATGGACAATATTTTAAAACCAGGAATAAGACTGGGGTTATTCGGTATTGTTGGGGGCATAT
TGGGCGGTCTGATTGCATCA

Downstream 100 bases:

>100_bases
TCTTTAAATTTAACTCCCATTCCCATTGCAGTAATTTGAAAACTGTCTCCACCTAAACCGATTAACCCATATTCTATTTT
TAAATCCAGGATTCCATTTC

Product: permease

Products: NA

Alternate protein names: Integral Membrane Protein

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MLPTQILKIIFGCLLLFIAIRNLMSADKKTSKARAKFNLINIAVVGVLVGISSGLLGVGGGVFIILILTVIFGFSMIEAI
GISSVFISLTAIGGTVSYIISGWGVNPFPYSLGYVSLVNFAVIAMFSVPLAYYGAKIAHKVPEKRLKQIFGLVVLYISLK
MLGVVP

Sequences:

>Translated_166_residues
MLPTQILKIIFGCLLLFIAIRNLMSADKKTSKARAKFNLINIAVVGVLVGISSGLLGVGGGVFIILILTVIFGFSMIEAI
GISSVFISLTAIGGTVSYIISGWGVNPFPYSLGYVSLVNFAVIAMFSVPLAYYGAKIAHKVPEKRLKQIFGLVVLYISLK
MLGVVP
>Mature_166_residues
MLPTQILKIIFGCLLLFIAIRNLMSADKKTSKARAKFNLINIAVVGVLVGISSGLLGVGGGVFIILILTVIFGFSMIEAI
GISSVFISLTAIGGTVSYIISGWGVNPFPYSLGYVSLVNFAVIAMFSVPLAYYGAKIAHKVPEKRLKQIFGLVVLYISLK
MLGVVP

Specific function: Unknown

COG id: COG0730

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17699; Mature: 17699

Theoretical pI: Translated: 10.54; Mature: 10.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPTQILKIIFGCLLLFIAIRNLMSADKKTSKARAKFNLINIAVVGVLVGISSGLLGVGG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCH
GVFIILILTVIFGFSMIEAIGISSVFISLTAIGGTVSYIISGWGVNPFPYSLGYVSLVNF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
AVIAMFSVPLAYYGAKIAHKVPEKRLKQIFGLVVLYISLKMLGVVP
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLPTQILKIIFGCLLLFIAIRNLMSADKKTSKARAKFNLINIAVVGVLVGISSGLLGVGG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCH
GVFIILILTVIFGFSMIEAIGISSVFISLTAIGGTVSYIISGWGVNPFPYSLGYVSLVNF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
AVIAMFSVPLAYYGAKIAHKVPEKRLKQIFGLVVLYISLKMLGVVP
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA