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The map label for this gene is 148642304

Identifier: 148642304

GI number: 148642304

Start: 229789

End: 230490

Strand: Reverse

Name: 148642304

Synonym: Msm_0244

Alternate gene names: NA

Gene position: 230490-229789 (Counterclockwise)

Preceding gene: 148642305

Following gene: 148642303

Centisome position: 12.44

GC content: 36.32

Gene sequence:

>702_bases
ATGGTAAATGTAGATGAAGCAATAATAGCTAAATATGAATATTGTGGGGAACATTTTGAAATATTGGTCGATCCGGATTT
AGCAGCAGAATTTAGAAATCCTGATGGGCAGGATGTGGCCATTGAAGATCTTCTAGCTGTTGAAGAAATTTTTAAGGACT
CTAAAAAAGGAGATAAAGCTTCTGAAGAAGCTATGCTTAAAATATTTGAAACTACAGACCCTATTGGAGTTTCTAAAGTT
ATACTTGAAAAAGGACATGTTCAATTAACTGCTGAACAAAAAAGACAAATGCAGGAAGATAAAAGAAGACTTGTTATTAA
TAAAATTTCTAGAGAAGCTATTAATCCCCAATCAGGTCTTCCTCACCCTGCACAAAGGATTGAAAATGCTGTTAATGAAG
CTAAAGTTAAATTTGATCCTTTTGTTTCAGTTGATCAACAAGTACAAACAGCCCTGAAAGCTATTAAACCACTTATTCCG
ATTAGGTTTGAAAAAGTTAAAGTAGCTGTTCGCCTTCCGGGTTCTTCAGCAGGAGGAGCCTACTCTGCAATCCATCATTT
TGGTGAAATTCTTAATGAAGAATGGCAGCAAGACGGTTCATGGATTGGCATTGTTGAGATGCCTGGTGGCCTTCAAGATG
ATTTCGCCGCTAAAATGGCTGAAATTTCAAGTGGTGAAGCAGAAACGAAAACTATCAAATAA

Upstream 100 bases:

>100_bases
TCAGGAAGAAGTACAGACTTTCATTGATGAGGTTGTATCTGAAGAAGAAAGTGAAGAGGAAAGTGAAGAATAAATAATTA
ATTGGTTAGGGGTTTTTTCA

Downstream 100 bases:

>100_bases
TTAAATTAATTTTCAACTTATGGGATTTTTATGATATATGTGGAAAATAAAGATTTAGTTATTCCTGGTGAAGTATTGGC
AGATGACGAATACTACTCAG

Product: putative RNA-associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MVNVDEAIIAKYEYCGEHFEILVDPDLAAEFRNPDGQDVAIEDLLAVEEIFKDSKKGDKASEEAMLKIFETTDPIGVSKV
ILEKGHVQLTAEQKRQMQEDKRRLVINKISREAINPQSGLPHPAQRIENAVNEAKVKFDPFVSVDQQVQTALKAIKPLIP
IRFEKVKVAVRLPGSSAGGAYSAIHHFGEILNEEWQQDGSWIGIVEMPGGLQDDFAAKMAEISSGEAETKTIK

Sequences:

>Translated_233_residues
MVNVDEAIIAKYEYCGEHFEILVDPDLAAEFRNPDGQDVAIEDLLAVEEIFKDSKKGDKASEEAMLKIFETTDPIGVSKV
ILEKGHVQLTAEQKRQMQEDKRRLVINKISREAINPQSGLPHPAQRIENAVNEAKVKFDPFVSVDQQVQTALKAIKPLIP
IRFEKVKVAVRLPGSSAGGAYSAIHHFGEILNEEWQQDGSWIGIVEMPGGLQDDFAAKMAEISSGEAETKTIK
>Mature_233_residues
MVNVDEAIIAKYEYCGEHFEILVDPDLAAEFRNPDGQDVAIEDLLAVEEIFKDSKKGDKASEEAMLKIFETTDPIGVSKV
ILEKGHVQLTAEQKRQMQEDKRRLVINKISREAINPQSGLPHPAQRIENAVNEAKVKFDPFVSVDQQVQTALKAIKPLIP
IRFEKVKVAVRLPGSSAGGAYSAIHHFGEILNEEWQQDGSWIGIVEMPGGLQDDFAAKMAEISSGEAETKTIK

Specific function: Unknown

COG id: COG1500

COG function: function code J; Predicted exosome subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SDO1/SBDS family [H]

Homologues:

Organism=Caenorhabditis elegans, GI25144459, Length=212, Percent_Identity=25, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24659572, Length=210, Percent_Identity=23.3333333333333, Blast_Score=80, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009022
- InterPro:   IPR018978
- InterPro:   IPR018023
- InterPro:   IPR019783
- InterPro:   IPR002140 [H]

Pfam domain/function: PF01172 SBDS; PF09377 SBDS_C [H]

EC number: NA

Molecular weight: Translated: 25837; Mature: 25837

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: PS01267 UPF0023

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNVDEAIIAKYEYCGEHFEILVDPDLAAEFRNPDGQDVAIEDLLAVEEIFKDSKKGDKA
CCCCHHHHHHHHHHCCCCEEEEECCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCH
SEEAMLKIFETTDPIGVSKVILEKGHVQLTAEQKRQMQEDKRRLVINKISREAINPQSGL
HHHHHHHHHHCCCCCCHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PHPAQRIENAVNEAKVKFDPFVSVDQQVQTALKAIKPLIPIRFEKVKVAVRLPGSSAGGA
CCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCHH
YSAIHHFGEILNEEWQQDGSWIGIVEMPGGLQDDFAAKMAEISSGEAETKTIK
HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MVNVDEAIIAKYEYCGEHFEILVDPDLAAEFRNPDGQDVAIEDLLAVEEIFKDSKKGDKA
CCCCHHHHHHHHHHCCCCEEEEECCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCH
SEEAMLKIFETTDPIGVSKVILEKGHVQLTAEQKRQMQEDKRRLVINKISREAINPQSGL
HHHHHHHHHHCCCCCCHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PHPAQRIENAVNEAKVKFDPFVSVDQQVQTALKAIKPLIPIRFEKVKVAVRLPGSSAGGA
CCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCHH
YSAIHHFGEILNEEWQQDGSWIGIVEMPGGLQDDFAAKMAEISSGEAETKTIK
HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]