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The map label for this gene is yebA [H]

Identifier: 148381545

GI number: 148381545

Start: 3849006

End: 3849941

Strand: Reverse

Name: yebA [H]

Synonym: CBO3606

Alternate gene names: 148381545

Gene position: 3849941-3849006 (Counterclockwise)

Preceding gene: 148381548

Following gene: 148381544

Centisome position: 99.05

GC content: 25.0

Gene sequence:

>936_bases
TTGAGTAAGGATATAGGGAAAAGACTTATTATACTATTATCTATAGGGGTTACCATTCTAGTAATTACATACGCTTATAT
TTATACTAAACCTAATGCTTATGAGGTACTAGTAAATAATAATCCTGTAGCATATGTGAAAAATAAAGAAGATTTTAATA
AAATATATAAAGAAGTAGAAAATAATATAAAAAAAAGATTTAATTTAGATATGAGAAATAATATAAATTTCGAAAATATA
AAGGTAAAGGGAGATATACTTACAAGTAATGATTTTATAAAAAAATCTATATTAGAAAATTCTAATATAAAAGTAACAGC
TTTCAAAGTAAAGTTTCAAGATGAATTTATAGGAATATTATCAAATAAAAAGGAAATTCAAGATTTAAGTAAAATAATAA
GTAAAAAATATTCTGTAAATATAATAAATCATATAAAAATAAAGGAAGAGACTATATCAGTGGAGGAAATAAACACTATA
GATGAGCTTGCAATAAATATATCTAAATCACAGAAATTGCAAAACTTTATGAATAGTAAAAGGCTATCAAGAGGAGATAT
AAATGAGGAAATAGCTTTAGCAATGCCCACAAATGGATGCATAACATCTAAATTTGGTAAAAGGTGGGGTAAATTTCATA
AAGGTTTAGATATAGGTGCTCCTAATGGTACTGACATTTATTCCAGTTTAGATGGTAAAGTTATATATTCTGGTTGGGAA
GAAGGATATGGAAAAGTTATAAAAATACAACATAGTTCTGAACTTATAACTATATATGCACATTGTAGCAATTTATATGT
TAAAGTAGGTCAATATGTTAAAAAAGGAGAAAAAATAGGAGAAGTAGGTAGTACAGGAAGAAGTACTGGTCCTCATGTAC
ATTTTGAATTAAGAAAAAATAATGAACCTTGTAATCCATTAACTTATATAAAATGA

Upstream 100 bases:

>100_bases
ACTACAGAATAATTATATAAATAATTAAAAATAGTAATAAAACATATTAATTTGGGAATATTAGAATATATGATATATAA
AAACTAAAAAGGGTGATATT

Downstream 100 bases:

>100_bases
TAATAAAAAATATCACTATCATTGACAGTGATATTTTTTTATTATATACTTTGACTATCAAAATATTTGATTATCAAAAA
AGTGAGGAGAAAAGAAATGG

Product: putative peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MSKDIGKRLIILLSIGVTILVITYAYIYTKPNAYEVLVNNNPVAYVKNKEDFNKIYKEVENNIKKRFNLDMRNNINFENI
KVKGDILTSNDFIKKSILENSNIKVTAFKVKFQDEFIGILSNKKEIQDLSKIISKKYSVNIINHIKIKEETISVEEINTI
DELAINISKSQKLQNFMNSKRLSRGDINEEIALAMPTNGCITSKFGKRWGKFHKGLDIGAPNGTDIYSSLDGKVIYSGWE
EGYGKVIKIQHSSELITIYAHCSNLYVKVGQYVKKGEKIGEVGSTGRSTGPHVHFELRKNNEPCNPLTYIK

Sequences:

>Translated_311_residues
MSKDIGKRLIILLSIGVTILVITYAYIYTKPNAYEVLVNNNPVAYVKNKEDFNKIYKEVENNIKKRFNLDMRNNINFENI
KVKGDILTSNDFIKKSILENSNIKVTAFKVKFQDEFIGILSNKKEIQDLSKIISKKYSVNIINHIKIKEETISVEEINTI
DELAINISKSQKLQNFMNSKRLSRGDINEEIALAMPTNGCITSKFGKRWGKFHKGLDIGAPNGTDIYSSLDGKVIYSGWE
EGYGKVIKIQHSSELITIYAHCSNLYVKVGQYVKKGEKIGEVGSTGRSTGPHVHFELRKNNEPCNPLTYIK
>Mature_310_residues
SKDIGKRLIILLSIGVTILVITYAYIYTKPNAYEVLVNNNPVAYVKNKEDFNKIYKEVENNIKKRFNLDMRNNINFENIK
VKGDILTSNDFIKKSILENSNIKVTAFKVKFQDEFIGILSNKKEIQDLSKIISKKYSVNIINHIKIKEETISVEEINTID
ELAINISKSQKLQNFMNSKRLSRGDINEEIALAMPTNGCITSKFGKRWGKFHKGLDIGAPNGTDIYSSLDGKVIYSGWEE
GYGKVIKIQHSSELITIYAHCSNLYVKVGQYVKKGEKIGEVGSTGRSTGPHVHFELRKNNEPCNPLTYIK

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=96, Percent_Identity=41.6666666666667, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI87082297, Length=121, Percent_Identity=32.2314049586777, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789099, Length=116, Percent_Identity=39.6551724137931, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI87082174, Length=208, Percent_Identity=30.2884615384615, Blast_Score=82, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 35335; Mature: 35204

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKDIGKRLIILLSIGVTILVITYAYIYTKPNAYEVLVNNNPVAYVKNKEDFNKIYKEVE
CCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCCEEEEECHHHHHHHHHHHH
NNIKKRFNLDMRNNINFENIKVKGDILTSNDFIKKSILENSNIKVTAFKVKFQDEFIGIL
HHHHHHCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHHCCCCEEEEEEEEEECCHHHHHH
SNKKEIQDLSKIISKKYSVNIINHIKIKEETISVEEINTIDELAINISKSQKLQNFMNSK
CCHHHHHHHHHHHHCCCEEEEEEEEEEEHHEECHHHHCCHHHHHEECHHHHHHHHHHHHC
RLSRGDINEEIALAMPTNGCITSKFGKRWGKFHKGLDIGAPNGTDIYSSLDGKVIYSGWE
CCCCCCCCCCEEEEECCCCCEECHHHHHHHHHHCCCCCCCCCCCHHHHCCCCEEEEECCC
EGYGKVIKIQHSSELITIYAHCSNLYVKVGQYVKKGEKIGEVGSTGRSTGPHVHFELRKN
CCCCCEEEEECCCCEEEEEEEHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCEEEEEEECC
NEPCNPLTYIK
CCCCCCCCCCC
>Mature Secondary Structure 
SKDIGKRLIILLSIGVTILVITYAYIYTKPNAYEVLVNNNPVAYVKNKEDFNKIYKEVE
CCCHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCCEEEEECHHHHHHHHHHHH
NNIKKRFNLDMRNNINFENIKVKGDILTSNDFIKKSILENSNIKVTAFKVKFQDEFIGIL
HHHHHHCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHHCCCCEEEEEEEEEECCHHHHHH
SNKKEIQDLSKIISKKYSVNIINHIKIKEETISVEEINTIDELAINISKSQKLQNFMNSK
CCHHHHHHHHHHHHCCCEEEEEEEEEEEHHEECHHHHCCHHHHHEECHHHHHHHHHHHHC
RLSRGDINEEIALAMPTNGCITSKFGKRWGKFHKGLDIGAPNGTDIYSSLDGKVIYSGWE
CCCCCCCCCCEEEEECCCCCEECHHHHHHHHHHCCCCCCCCCCCHHHHCCCCEEEEECCC
EGYGKVIKIQHSSELITIYAHCSNLYVKVGQYVKKGEKIGEVGSTGRSTGPHVHFELRKN
CCCCCEEEEECCCCEEEEEEEHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCEEEEEEECC
NEPCNPLTYIK
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]